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52-0702-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94276 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0702-1 - 5-prime edge 
    GTAGCCAGAG CAGCAAGTTT ATCAAAATCC CGTCTATCTT TTTTCTCCCT 
    GGAAATAACT TCTTGCTTTA AAGAATCTTT CAAAAGCATT GAAAATCTCT 
    TATTCCAATC ATCCAAGTCG GCACAGTGAA AGGTACCCTC CTGCTGCAAA 
    TTGATATGGT TCCAGTAGAA AGATAAAGGG ATTTTTATAA AATACTACTC 
    GA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 94160 [Map]; Strand: w
      • AT2G01130.1 - [+] show detail - DEA(D/H)-box RNA helicase family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0702-1 - 3-prime edge 
    CTGGCTACAA CCCTGGGATT GTATAGGTAC ATCAATCATG CTGCTCCTTT 
    CTTTCTTCTT TCTCACTAGT ATAACCATTT CTGTTTCTTT TTTGCAGTCA 
    TGCATATGCT AAGGTTGTTG TCTTCAGTAA GATCCCACTC CCCAACTATA 
    GGTTTGATTT AGATGACAAG AAGCCACAGA GGGAGGTATT ATCCGCTGCT 
    CCTCACTCTC TTCTCTTACA CTTAACGCAA GACGGCTTGT TTTTCTTTAA 
    AGAGCAGATA TATACAAAAA TATTTACAGG TGAATTTGCA TACTGACCTT 
    CTTCAAAGAG TTGAAGCT

AT2G01130.1

Model type
Protein coding
Short Description
DEA(D/H)-box RNA helicase family protein
Computational Description
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 13137 Blast hits to 8990 proteins in 1526 species: Archae - 10; Bacteria - 5358; Metazoa - 2929; Fungi - 1766; Plants - 978; Viruses - 93; Other Eukaryotes - 2003 (source: NCBI BLink).
Link
InterPro Scan - TAIR