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52-0705-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7951658 [Map]; Strand: w
      • AT5G23580.1 - [+] show detail - calmodulin-like domain protein kinase 9
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0705-1 - 5-prime edge 
    GTNANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCGAAAATGC TTCTCCTGAA AGACAAAGAT 
    TTGTGTGTCC AAAACAAGAG CTCCTTATCA AACTAATTCA GCTAAACCAC 
    ACACAGTCAC TGCATTTGAA AGATGGGATC TTAAGCAAGG GGTCAATGTG 
    CTCTTTTAAA GTACTACTAA TAGACAAACT GACTCATCAA GTAACGAAAT 
    TGATACTCAT AAACATCCCC AACACAGTCA CGGAACAAAA TTAGAGAAGA 
    ACAAGAACAA ATTCACACCT GGTGTGCAGA AAACAGAGAG GCCAAAGTCA 
    GTAGATTTAA GAGAAGCATC TTCATCAGAA GAAGAAAACA AGAAATTCTC 
    AGGCTTAAGA TCTCTATGAA CAACACCAAG AGAGTGACAC GCCTCAACAA 
    CCCCAACAAT GGTCTTGATA AGCTTTCACG GTGTACGCAA GGTCAGTATG 
    AGTCTTTGGT TNTGTGTCTT TTAACAAGGA TACAATTCAT ACGCGTATAA 
    GATCCGGTTG CGGTTTAAGT TCTTATACTC AATCATACAC ATGACATCAA 
    GTCATATTCG ACTCCAAAAC ACTTACCAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3950797 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -195; Region: promoter
    Flanking Genome Sequence: 52-0705-1 - 3-prime edge 
    TTTAAAACGG ANGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGTG 
    ACATGACATC AAGTCATATT TGACTCCAAA ACACTAACCA ACCTTCTCTT 
    TGCCTTTCAA AGCTTTCATG GTGTAGCCAA AGTCCATATG AGTCTTTGGC 
    TTTGTGTCTT CTAACAAGGA AACACTACTT AGGCTTCTAT GATCGGGTTG 
    CGGTTTAAGT TGTTATACTC AATCATACAC ATGACATCAA GTCATATTTG 
    ACTCCAAAAC ACTAACCAAC CTTCTTCTAG CTTCTCAAAG CT

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT5G23580.1

Model type
Protein coding
Short Description
calmodulin-like domain protein kinase 9
Curator Summary
unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+
Computational Description
calmodulin-like domain protein kinase 9 (CDPK9); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 2 (TAIR:AT1G35670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR