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52-0741-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7973650 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0741-1 - 5-prime edge 
    CNCGGGAGAG AGGAAANCAG CCAAGGANAT GANGTTTCCT GAAAATTACA 
    CGATAAGAAA TGAAAGTGGC TAGTGTTAGT ATATACTGGT TTTGATATCA 
    AAATTAGGAT ATAGCTAGGT TCTGGTGATA TCAAATTTTA AGAGAGATGA 
    ACGTGAGAAC TCATACCGAG CAAGCCGAAA ACAAAGGCCC ATGTGTTATG 
    AGTGTCGAAG AGAGCCATGA ATGTCGATCT NTGGTTCCNN GCTAANGGAT 
    TGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7973534 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0741-1 - 3-prime edge 
    CTCCCGTGTA AGTATTACTA TTGCATCATT ACTTCACTCT GTTCTTGTTT 
    CTTCATAATA TATGTCATTA CATATGTTTA TGTTTTTATC TAACTAGCTA 
    GCTAGATTCA ATTGTAAATG GCTTCATGTC CGGGAAATCT ACATGGATCA 
    GCAATGAGTA TGATGGTCAA TATGGAGAAA AAGAAAGAGT AATTACCAAT 
    TTTTTTTCAA TTCAAAAATG TANATGTCCG CAGCGTTATT ATAAAATGAA 
    AGTACATTTT GATAAAACGA CAAATTACGA TCCGTCGACC TGCAG

AT5G23660.1

Model type
Protein coding
Short Description
homolog of Medicago truncatula MTN3
Curator Summary
homolog of the Medicago nodulin MTN3
Computational Description
homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR