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52-0742-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 580103 [Map]; Strand: c
      • AT4G01420.1 - [+] show detail - calcineurin B-like protein 5
        Distance: 0; Region: intron7 (CDS)
    Flanking Genome Sequence: 52-0742-1 - 5-prime edge 
    ATGTTACTAT TATCTTCTTT GATTTTATTT TTCTTGTGTA TCAGATCATT 
    CTGTTTNATA NATTGAGATA ATTATTCTAA AANGAACTTT TATTGNTCAG 
    GGACATACCG AGGATTTTCC CAACCTTTCT CCGGTAAAAT CAGATGAGGT 
    GTCNGCTTGT GCCATGTGCT ANAGCCTANA GGTNTTTATT AAACAATATT 
    TNAATCNGAA ACTCACATAA GTNNNNNGAN NAANTAANAA TAGAGNGATN 
    GAAGTTAGAT ACCACGAAAN ACTATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9026084 [Map]; Strand: c
      • AT5G25880.1 - [+] show detail - NADP-malic enzyme 3
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 52-0742-1 - 3-prime edge 
    CGNGGCTNNT GATGAANCCG CANANACNAN TGCCANGTNT TNTACTNATG 
    TCTATGNAGC TACTTTTNCG ANANNTTGTT GATGTCNNTN NANNATGCAC 
    CATATCATCT AATATTTANA ANNTGGNCTN TGCAAACCTA ACTGCGTAAG 
    CACCTNCCTG AAANGAAGNG GGGGNGTTCT TTANGTGTTN NAAGATTGGN 
    GGCCNGNTAA TNNTCCCATN NNTTCCANTT NTATTATCCC ATNTTNTTTN 
    CAATCGGCTC CCTACANAAG NCTGTNCCAG ATATANGTTA NCATNNTTAG 
    NANGTANNAT CACTATNATG TTAAATCAAG CTCATAAACN NAAGCGNNTN 
    NCGCACCTTA GACACGATGA GAATCANTGA TACTCTGCNG ANAGCATAAA 
    ATTCCGATTN NTCTAGAACG TCCNATNATC ATCTNTTTCA CCNATAGATT 
    TGTNNNANTC AAGGAAAANC CGNCANATNN GCATNNATCA NGACTATTAC 
    TTTNTTCTTG AGACANNNNT NCACCTACGG TTCGCTTNCT CCGGTTCANN 
    NGANTNCGNC CTCTCGNCGG GTNTGNNCGN AATCCCCANG NGCAANCTGT 
    NCAANCGCAA GCCGCGCGAC CNGNCCGNAT NNNCGGTCCC AAAGAAGAAT 
    TNGGGCTTGG TGGACTCCAA GGTATTGGNT GGCTACATGA TTGGGTTNGA 
    TTTTGGATTT CTTTGTTCAT TTACAAAACA TTCTTTTTGG GATTATCTTG 
    CAGGGACTGA TTGTTAGCGA ACN

AT4G01420.1

Model type
Protein coding
Short Description
calcineurin B-like protein 5
Curator Summary
Encodes calcineurin B-like protein 5 (CBL5). Overexpression confers tolerance to drought and salt stress.
Computational Description
calcineurin B-like protein 5 (CBL5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to salt stress, response to water deprivation, N-terminal protein myristoylation, calcium-mediated signaling, response to osmotic stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, flower, leaf; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G24270.2); Has 5545 Blast hits to 5527 proteins in 657 species: Archae - 0; Bacteria - 7; Metazoa - 2787; Fungi - 925; Plants - 1302; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25880.1

Model type
Protein coding
Short Description
NADP-malic enzyme 3
Curator Summary
The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.
Computational Description
NADP-malic enzyme 3 (NADP-ME3); FUNCTIONS IN: malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity, oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity; INVOLVED IN: N-terminal protein myristoylation, malate metabolic process, protein homooligomerization; LOCATED IN: cytosol; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Malic enzyme, NAD-binding (InterPro:IPR012302), Malic oxidoreductase (InterPro:IPR001891), Malic enzyme, conserved site (InterPro:IPR015884), Malic enzyme, N-terminal (InterPro:IPR012301), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NADP-malic enzyme 2 (TAIR:AT5G11670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR