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52-0757-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17165337 [Map]; Strand: w
      • AT2G41178.1 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
      • AT2G41180.1 - [+] show detail - VQ motif-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0757-2 - 5-prime edge 
    CTCATAAACC AGAGAAAGTC ATCATCGTCT CCGACTAGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17165221 [Map]; Strand: w
      • AT2G41178.1 - [+] show detail - other RNA
        Distance: 0; Region: intron1 (NonCoding)
      • AT2G41180.1 - [+] show detail - VQ motif-containing protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0757-2 - 3-prime edge 
    TTTATGAGCA ACGTTGATGA TGACTGATCC ATCTTCTTTA GTTCTTTTGT 
    AATATGGAGA AAAATTTAGA TGTGTGAGCT CTCTCTTGTT TTAGTCCAAT 
    TTTTAAATAT ATATACAATG AACACTTTTT TTTTATGTAT CGTTTTTACN 
    TTTTAGGAAG GAGAGTGGAA GTTAATGAGA AAGGAGAAGA AGTTACTGAG 
    AATTAAGGGA AGAGAGAAGA AACAAACAAA AAAATTAATG GCATTGAAAA 
    AAGTCCTCAT CCGCTGATAG CCGACGGCGC GTTTAGCCCA CGCGCGTTTA 
    AGTTCATCGT GTCTCCATGA CATCTTTTAC TTAGATGACA AGTGTGATTT 
    GTTACTCTTT TTGATTGAAC ATTCTGTTGG ACCAAAAATA TATATATACG 
    GTCGGACACA ATGTGGAGTT TTTAGTATTA ACTTTTATAA ACAAGACTAA 
    ACTGATGATA GTCATATTTT TGTTATTATA GTATATCTAC TTGAATAACC 
    CCTTAACCAG TATTTAAATA ATTGACAACA TAGAGATATC TATACCATTT 
    GAACATTCAA TGGTTGTCGT CAAATCGGAT AAATAATGAC TGTTTTAATT 
    TTTTCTGAGT CCCGGGCCGT GTGTTGCACG CGCTGAACAA TCACGTGATG 
    GAAAATATGA GGATAAGTAA AAAAAAAAGT GGAAGCCCCC GTCGGCTATT 
    TANCCCTCAG GGCATCAACA AAGCCCCNCG TCAAGAAT

AT2G41178.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G41180
Link
InterPro Scan - TAIR

AT2G41180.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: sigma factor binding protein 1 (TAIR:AT3G56710.1); Has 49 Blast hits to 49 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR