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52-0772-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11771444 [Map]; Strand: c
      • AT2G27540.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2344; Region: intergenic
      • AT2G27550.1 - [+] show detail - centroradialis
        Distance: -1807; Region: intergenic
    Flanking Genome Sequence: 52-0772-1 - 5-prime edge 
    GTGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC ACATGTGATC GTGATAATAT TTTTAATTAT 
    TATTTTTTTA TACTTTAGCA TATGCTCCCA CAACAATCTG TGACACTATC 
    ACACTAACAT TAATATTAAA AGCACAACAT GTCAATCATA TATACNGGTC 
    TTATTCGCAA GTCCTGTGAT AGAACTTTTC TTCTCAGGTA GAGGAAACCA 
    ACCTTTCATT TGTTCCTTGA AACTGAAAAG TAAAAAACCA ATCGAAATTA 
    AAGCTCGTCA GTTACATCGT TTAATTAGAG CCGTTATTCG TGACTTATAT 
    ATTAAGACAG CTATAGTTTA TTGCAAACTT TGTTGAACTT AGAAATTTCA 
    GTGTATACCA GAAAAATGTT TTGAAACTAA ATGCATTTAC ACATACATAT 
    AGACATAACG CATTTAGGCA TTTCTGACAT GTTTTCGCAC CGACTTGATT 
    GGTCTAGAGA CCGTCCATAC AAAACAGAGA TTATCATTTA GTTTTTCCAC 
    GTACAAAAGT ATAATTAAAT GCAATTTTGG AAATAGTTAA TTCATGGAAT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 11771444 [Map]; Strand: c
      • AT2G27540.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 2344; Region: intergenic
      • AT2G27550.1 - [+] show detail - centroradialis
        Distance: -1807; Region: intergenic
    Flanking Genome Sequence: 52-0772-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAC 
    ATGCAAAGTA CACTTGAAAC GTGTAATCTG AAGACAGTTA GGTTGGAATC 
    AGGGTTTCTA TAAGAGGAAA CCCAGATCTT GTTTTTCTAC CTCATAGTTT 
    TTTTTATGGA AAAGGAAAGA AATTACATAT AAATAATTCA AAAGTGGCAG 
    AGGAAATGAA TCTCTTTGTC AAGTTGATGT GACCTTTCAC AATTTGTCAA 
    ACTGTCAGCT TTTGAATGTG TTGGAAACGC ATTGGGGTTG TGGGTCGCCA 
    ACATTAACAT TTCCAAAAAT GGTAAGTCCA AGAATAATAT TAGTTGTTTT 
    GGGATATATT CTTTGCAATA CATCCACACA CCTAACAGAG AATATATTTC 
    TTTTCCTCAT ACTCCAATAT TATTACTTTT TAAGAAAATA ATTAAGTTTC 
    ATATTACCCT TATTGCAAAA GCGACGTTTA GAATTTTAAA CAGAATAATG 
    ACACTTGAAA TTTGTATCTT TCTTTCTTTA ACATTAAAAA ACAAGGGGGC 
    GATAAAAGCA ACCAAAGCTG TGATTCATGG TCGACACTAA CACATGGAAT 
    AAAAAAAGGT TATCTCTTTT TTCCAACATT TCTCTGGTGA CTAAGTTAAT 
    TGAATAAATT GTATGCATAT ATTTATATGT TCTATATATA TACTGTCCAA 
    AAAGGAATTG GGGAATTTTT AACTTTTAAG GACCATATTG GAAAATCTGC 
    CACTTCTCAT CCACTCATAG GTTCGAAATT GGTTT

AT2G27540.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52080.1); Has 8 Blast hits to 8 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G27550.1

Model type
Protein coding
Short Description
centroradialis
Curator Summary
encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.
Computational Description
centroradialis (ATC); CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2165 Blast hits to 2165 proteins in 308 species: Archae - 0; Bacteria - 2; Metazoa - 605; Fungi - 111; Plants - 1396; Viruses - 3; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR