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52-0777-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23904274 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -541; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 52-0777-1 - 5-prime edge 
    CACGGGAGTA TCACAGAAGA CCAAGAAAAT GACTCTGGTG CATCAGAAGG 
    CCAAGCCGAA TTCAGCTACC TTCTTCCACT GGTTGGGCGA AACTCTTCCT 
    TCCCGGTTCT TCAGCTTCCG GACCCTAACC CTTGNACCCA AAAACCNGGA 
    AAAATTCAAA AACTTTTTTG NATTTTTTTT TTAGNAAGNA AATTCCAAAA 
    ATCCGGAGAA AAAATTGGCT TTTTTCCCCC CNGGGAGGTT TAATGGGCCG 
    GGGATCCTAA GGNAGGGGGG ACCTAAAACC CCCGGGTTTN GGGAAAACCC 
    CAAAANCCNN GGNNCCCNNT TTCCCTTTTT TAAAAACCTA AANGGGGGGA 
    AAAAAAAAAN NTTTNGGGGG CCCTTTTNTT TTTTTTTTAA AAAAANCCCC 
    CCCNCCCCCC CNAAAAAAAT TTTCCCCNAN AGGGGANAAA AAGGGGGGGT 
    TTTTTTTTTT NAAAANAGGG GGGGGGGGCC NCCNCTTTTT TTTNAAACCC 
    CCCCTNTTTT TTNTTTTTGN NGGGNAAAAA AANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23904390 [Map]; Strand: c
      • AT5G59240.1 - [+] show detail - Ribosomal protein S8e family protein
        Distance: -657; Region: promoter
      • AT5G59250.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 52-0777-1 - 3-prime edge 
    CTCCCGTGCG TATTGATCCT TCTCGTTAAT TTGAATTTAA CTGTTCCTGA 
    GTAATGGATT TGGATTGCCT GTGTAATGAT CTTGCCTAAT GACTTAATCT 
    CTTAGCAATG CCTTATGTGT CATCAATTAT AGAAGATAGA AAATTAGTTA 
    TTTGCCTAGA TTGCACTGAT TTAATAGTAA TTTACTTGAA TCGTAGGTTT 
    ATCTTCCCGG CTTTGGGAGG ATTATTGTTT GGGTATGACA TTGGGGCTAC 
    CTCCGGTGCT ACGCTCTCAC TTCAGGTTAT TTTAAAGTAT CTATTTTCAT 
    CTAGTTACAT TTTAGCTTTC AGAATTTTAA CATTATGTAC TGTCTCATAT 
    GGTCTTGAAC AGTCACCTGC GCTTAGCGGA ACTACATGGT TTAACTTCTC 
    ACCTGTTCAG CTAGGACTTG TGGTATGTTA TTTGGAGATC GATATTTTCT 
    GTAGTTAAGC CATAGAGTTA GCAGAAAATG ATAGTTTTTA CTGCATTTTG 
    TTGTGTAGGT TAGCGGATC

AT5G59240.1

Model type
Protein coding
Short Description
Ribosomal protein S8e family protein
Computational Description
Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59250.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR