1. Home
  2. Mutant Lines
  3. 52-0788-1

52-0788-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8348690 [Map]; Strand: w
      • AT5G24440.1 - [+] show detail - CTC-interacting domain 13
        Distance: -914; Region: promoter
      • AT5G24450.1 - [+] show detail - Transcription factor IIIC, subunit 5
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 52-0788-1 - 5-prime edge 
    ATTGTATTCA CTGGGATTTT GGATAGTCCC AGTGAAAATC TTTCAATCTT 
    GTTCGTGTTA CATTTTCTGA TTTATGAGAG GAATAAAAGT CTACCACTTT 
    AGGTAATAAC NTTATCTCTT TTGATTCTTG TATCACAGCA AGTTTCAACT 
    TGGAAAGAAA CAATGGGAAT CATTGAAAAC GGAACTATCT CGGGTAACTT 
    GCCTAGCAAG GAGGCGTTTG TGGTTCACTA TCCTGGCTAT CCATCATCTA 
    TTTCCCGAGC CGTGGAGACT CTCGGGGGAA TCCAAGGAAT CACAACCGTA 
    AAGCCTTTTC CTAAGACTCT TGTTTCTTTG CCTGCTAGTT ATTACTAGGA 
    ATCCCTGATT TGTATGCTGA TTATCCATAT AGCTCTTTTG TAGCGTTGTT 
    TGGGTTTCTT TTGCTTGATG CATTCCATGA TTTAGCAAAT TGGTCACATT 
    TCTAAAATGT TCGACAAGTA AAACATAAAC TTGATTAGTA GCAAACTTGT 
    ACACAAGGGT TGGACGGTTT AATCACTTTG AAAGTTTTTT TTTCGTAGGC 
    AAGAGAATCA ACGTCAAACA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 3952556 [Map]; Strand: c
      • AT4G06700.1 - [+] show detail - transposable element gene
        Distance: -1954; Region: intergenic
      • AT4G06702.1 - [+] show detail - transposable element gene
        Distance: 4626; Region: intergenic
    Flanking Genome Sequence: 52-0788-1 - 3-prime edge 
    AATACAATAA CATAGCAAAC AATTTGTCTA GAGCTGATTC CGGTAGAGAA 
    AGAAAACACT GAGCAAATCG CACCAGAAGC AAATTGAAAC ACGAAACCTT 
    TTAGATAGTT AGAAGGTATT GAAGACTATA AGCTNCCATG GCGNACCNAA 
    ANNCCNTCTG NGCNCTTTGG CTTTGTGTCT TCTAACAAGG ATACACTACT 
    TAGGCTTTTA AGATCGGGTT GCGGTTTAAG TTGTTATACT CAATCATACA 
    CATGACATCA AGTCATATTC GACTCCAAAA CACTAACCAA CCTTCTTCTT 
    GCTTCTCAAA GCT

AT4G06700.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.7e-54 P-value blast match to dbj|BAB64937.1| TdcA1-ORF1-ORF2 (Daucus carota) Spm/En-like (CACTA-like)
Link
InterPro Scan - TAIR

AT4G06702.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G24440.1

Model type
Protein coding
Short Description
CTC-interacting domain 13
Curator Summary
RNA-binding protein, putative. Contains PAM2, PABC binding domain.
Computational Description
CTC-interacting domain 13 (CID13); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 10 (TAIR:AT3G49390.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24450.1

Model type
Protein coding
Short Description
Transcription factor IIIC, subunit 5
Computational Description
Transcription factor IIIC, subunit 5; CONTAINS InterPro DOMAIN/s: Transcription factor IIIC, subunit 5 (InterPro:IPR019136); BEST Arabidopsis thaliana protein match is: Transcription factor IIIC, subunit 5 (TAIR:AT3G49410.1); Has 680 Blast hits to 642 proteins in 201 species: Archae - 0; Bacteria - 19; Metazoa - 202; Fungi - 159; Plants - 80; Viruses - 10; Other Eukaryotes - 210 (source: NCBI BLink).
Link
InterPro Scan - TAIR