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52-0789-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2047896 [Map]; Strand: c
      • AT1G06680.1 - [+] show detail - photosystem II subunit P-1
        Distance: 0; Region: exon1 (5UTR)
      • AT1G06680.2 - [+] show detail - photosystem II subunit P-1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0789-1 - 5-prime edge 
    GGTGTAGGAA ACACGCACTG TACGCCATTA TCTCTGTCTC TCTTTCTCTC 
    TTTCTCTCTT CTCTCCTTGT GTGTGATTAA GTTATGAAAG TGTTTTTTGA 
    GGATTGTTGG TGTGTTAATG TATGGAGGTG AAACCAAGAG TGAAGCTGAT 
    TGGTTGGTTT CGGATATTGG AGGATCTCTC TGTTGATGTC CAGATAAGGC 
    TGTTGAGGTG TTGTATTGTG CCACGTGGCA GATACGCTTT CTTCTTGTTC 
    CACGTCAGAT TCATAAGCCT TCGATTCCAT CTATTTTAGT ATTTTACTCT 
    AAAGCCATTC CATGATCAAA TCTTTTTTCT GCTCACACTA AGACACTACA 
    GTACTGGATC AATAATGGCT TTTCTTCTTT CAGTTACATG CGTATATCTT 
    AAAACGTTTA TAACGATAGA ACAACGGAAG CACTAAGTGA GAATGAATAC 
    AAATTATCTA ACAAAATTGT TGAAATTAAG AATCTGTTAC ACTTATGTAG 
    ACAAGTGCCA TTTCAAAACT TGGTTTCATG ACAAACACCG AAATGCTCAT 
    TAAAACACCA AAGTGGAATG GGCATCATAC TTCCCTTCTT CTTTCGGTTT 
    TGCTTANGTT GGTGCAGTAT TTGAGCCACA CTGCTCATTG ATCGGAAGGT 
    ATGCTCGGTT TTTNCTCAAT CAAACCTGAC TTGNTTCCCT GGCTCAATAC 
    ATTAGTGGAA NGCATTTTCT CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2048012 [Map]; Strand: c
      • AT1G06680.1 - [+] show detail - photosystem II subunit P-1
        Distance: 0; Region: exon1 (CDS)
      • AT1G06680.2 - [+] show detail - photosystem II subunit P-1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0789-1 - 3-prime edge 
    CCTACACCAG AGCGCATTGG CTTCATCAGC CGCACGATCA TCATCTTCCT 
    CCTCATCCCA GCGTCACGTG TCGCTCTCCA AACCTGTTCA GATCATCTGT 
    AAAGCTCAAC AGTCTCATGA AGACGATAAC TCCGCCGTCT CCCGCCGTCT 
    TGCTCTCACT CTCCTCGTCG GCGCCGCTGC TGTTGGTTCC AAAGTATCTC 
    CTGCTGATGC CGCCTACGGT GAAGCTGGTG CGTTTATAAA ATAAAATAAC 
    CTTGGATCAT TTCATTTTCT TGAAGAAGAA TCTTGAAGAA CATATTGTGT 
    TTTTTTCATC CTATTTTTAT TTTTTGGTTT GTTGCAGCAA ACGTGTTTGG 
    GAAGCCAAAG ACGAACACAG ACTTCTTGCC ATACAATGGA GATGGGTTCA 
    AAGTGCAGGT TCCAGCAAAA TGGAACCCAA GCAAAGAGAT TGAGTATCCA 
    GGACAAGTCC TTAGGTTCGA AGACAACTTC GATGCTACTA GCAATCTCAA 
    TGTCATGGTC ACTCCTACCG ACAAGAAGTC CATCACTGAT TACGGTTCTC 
    CCGAAGAGTT CCTCTCTCAG GTCTTTGCTT TACTCCATCA TCTGTAAAGG 
    TATTGATGTT ACAAAATCTA ATGAAGTGTG AGACTGAGTG GTGATTTGGG 
    CTTTATGCAG GTTAATTACC TCCTAGGGAA ACAAGCTN

AT1G06680.1

Model type
Protein coding
Short Description
photosystem II subunit P-1
Curator Summary
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational Description
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 12 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 287 Blast hits to 286 proteins in 81 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06680.2

Model type
Protein coding
Short Description
photosystem II subunit P-1
Curator Summary
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.
Computational Description
photosystem II subunit P-1 (PSBP-1); FUNCTIONS IN: poly(U) RNA binding; INVOLVED IN: photosynthesis, light reaction, defense response to bacterium, response to light intensity; LOCATED IN: in 9 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-2 (TAIR:AT2G30790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR