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52-0792-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8245577 [Map]; Strand: c
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2220; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 5801; Region: intergenic
    Flanking Genome Sequence: 52-0792-1 - 5-prime edge 
    GAAAAACTAA CAAAATCGGT TATACGATAA CGGTCGGTAC GGGATTTTCC 
    CATCCTACTT TCATCGCAGC ATCGGTTTTC TGTTGTTTGT ACAGAAAGTC 
    ACCGCCTCCA CAGTCTCTGT TTCTGTCAAA GAAAGGAGTA TTTGGCCTCG 
    TAGCACTTCT TGGTTCAGTT GCCTCCACCT CCCTTAGCAG GTGACATAAA 
    TTTATAGCCA CAGTGTTACT ACTGATCATA GTGGCCAAAA CTTTTGTATC 
    TGAAGTCATT TGGTATGCAG GGTGTTATCT GAATATTTGG GAGAAGACAT 
    GTTGCTCGCT TTGGTATGCA AATCGGCACA AATTGGACCT AATAATGCTG 
    AGTTTCTCAG GCTTCAGTCC AATCATCGGT TTCATGTTCT ATGTCTTGAT 
    GCAATCAGGT ATTTGTCAAC ATATCGATAG CTAAACCTTA AGAGTCGTTT 
    CTGACAGAGT CATAAGTGAT CTTTTCAAAA CACGCAGAGC TTGGAAGGAT 
    GGAATTTTGG AGAACGATCC TCAGAAGAAA CTAGCTATGG ATGTCCCGAA 
    GCTGCCCAAT GGAGAACCCA TACGGGGTTT CAAAGGCTAT GCTGTTAACA 
    TGATTGATTT GGCTCCAGAG GAGCTCACTA TACAAACTTA CTCGGGATAC 
    GGGCTTAGAG AGACGTTGTT CTATAATCTC TTTGGGAATT ACAAGTATAT 
    GAGACCCAAA AGCAAGTTGA AGCAGCTCTT NCACACATCA ATGGTTGTGG 
    NGCAGTTCTT TAAATGGTTT TATCGCAAAG AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8245585 [Map]; Strand: c
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2228; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 5793; Region: intergenic
    Flanking Genome Sequence: 52-0792-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGTG 
    CAGTGTCGTG ATGCTTCTCT TCAATCTGTT TCATCATTGA TTCTTTGGTG 
    GATAGGCATT CTGGGAACGT AGCACCGAGA GGTTCTAGAG AAGCTGAGAT 
    AAAGGCAACA TGAGCAGGTA AGCATCAATG CAAATTCAAG CCCCATCATA 
    GTTATCAAAC TTCTTCCAAT GATAATAGTT ACCTTGCAAT GTACGCAACT 
    CTTCCTTAGC CTGGTTTTGT TCAGCTTCCA AACAATTTAG GCGCTCATCT 
    ATTTCCACTC TGTGTTCACT GTATCCAATA AGATTTTCTT GAAAGCTCTG 
    CAGTAAAATT CAAAAGTTAA CTCGGAAAAC GAAAGTTAGA TCATTCGAGA 
    AATCGTTCTG CATAAATGAA ATGTAAACAT CAATATCTGT GGGTTAAATG 
    GTGATGGCCA TATACCTCAG TGAACTGTGC CACATCCCTC AGGCTCGGGC 
    CAGTTTGGCT ACTGAGAGCC GGTGAATTTG TGCTTGAAGC CATCTTTGAT 
    TGAGGTGTTA AACTCATCCT TGAATAAGGT GTCTCATCTC TTTGAAGTAT 
    TTGAGCAGGT GTTAGCTGAA TCTGTAAATG AAGAGGACAT GTTATCAACA 
    ACCTGCATTT TCTACTCATT GTAAAAACAT ATTGTAACTT GTAAGATAAC 
    TCAGTCCACA ACATTACTAC CTTTAAGCTC AGATGAAGCT CGGGAAATCG 
    AGAATGGAAA ACCTTGNAAG AAAAGACACC CTNCCTCT

AT5G24270.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Curator Summary
encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
Computational Description
SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
Link
InterPro Scan - TAIR

AT5G24280.1

Model type
Protein coding
Short Description
gamma-irradiation and mitomycin c induced 1
Computational Description
GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR