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52-0797-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15448580 [Map]; Strand: w
      • AT2G36830.1 - [+] show detail - gamma tonoplast intrinsic protein
        Distance: 2006; Region: intergenic
      • AT2G36835.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1023; Region: intergenic
    2. Chromosome: 1; Position: 23875795 [Map]; Strand: c
      • AT1G64330.1 - [+] show detail - myosin heavy chain-related
        Distance: 1597; Region: intergenic
      • AT1G64340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -2330; Region: intergenic
    Flanking Genome Sequence: 52-0797-1 - 5-prime edge 
    GTGTTAAGCC ATACAAATAT ACTACATACT CTTATATATA GACACATACT 
    GTAAATAGAT TCATTTGGGT AATTGGTTAC ATGTTCTAAA TCCTAACTCT 
    TAAATTTCTA GACTATTGCC TTGAACAAAA TTAATATTTC ACGTCGAAAC 
    TGTGATGAGA TGAATAAGGT ATATGAGTGA ATACAATTAT ATATATGGAC 
    AACTGATTTG ATTTGGAACA TATCAGTTGA AACCCAACAC TAATCCACTG 
    TTATTCAACT AATGATTCTA CATTCAGCTT TAAAATCTAG TGTTATTGAA 
    ACTCATATTT GTAAATCATG CTTAATAGAT TTTAAAGTTT GGTGTTATTC 
    AATTAAGATT TTAAATATTT CATTAAAATC CAATGTTATT CAAAACTAAA 
    AGACTTGTAA AATCTTTGTA TATTAATTGA TTTGAAACGA AACCTCTTTG 
    GAGTTTCATG AGTAAATCAT TAGAATCAAA ATCCAAGACA TATTGCAGAG 
    ATTTTGAAAT TCATACAAAC ATATTCTTAA AAGCAATATC AGAAAACAAA 
    TCTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23875914 [Map]; Strand: c
      • AT1G64330.1 - [+] show detail - myosin heavy chain-related
        Distance: 1716; Region: intergenic
      • AT1G64340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -2211; Region: intergenic
    Flanking Genome Sequence: 52-0797-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG CTACCAAGAC 
    AATTTCATAA AACTAATTAT ATTCGTTAGC CCATTTGTAG AAAACAAAAT 
    TATAACTATT ACTTAAAATT CCAGAGATTT TTTTTTCTTT CTAGAGATCT 
    CTTTTGAATC AACTAATAGA GTTTTATATT TCATGACATT TTTCTTTATT 
    AAAGTTTATT GTATTGATTG GTTAAGGTTT GCGTGATGAC ATTGGGTACG 
    ACTATAGAGT AGTCATCAAG TTCGAACCTA ATTCATTAAA GGTTTATAAT 
    CTAGGCATTT TTTTTCTTTG ACGTAGGCAT ATACATCAAA ATAAGGATC

AT1G64330.1

Model type
Protein coding
Short Description
myosin heavy chain-related
Computational Description
myosin heavy chain-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: COP1-interactive protein 1 (TAIR:AT5G41790.1); Has 217439 Blast hits to 106017 proteins in 3642 species: Archae - 3189; Bacteria - 45762; Metazoa - 90441; Fungi - 17255; Plants - 11343; Viruses - 888; Other Eukaryotes - 48561 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36830.1

Model type
Protein coding
Short Description
gamma tonoplast intrinsic protein
Curator Summary
Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems.
Computational Description
gamma tonoplast intrinsic protein (GAMMA-TIP); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2 (TAIR:AT3G26520.1); Has 11016 Blast hits to 10983 proteins in 2213 species: Archae - 82; Bacteria - 5238; Metazoa - 1501; Fungi - 451; Plants - 2489; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G36835.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR