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52-0808-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 17050074 [Map]; Strand: c
      • AT5G42591.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 13294; Region: intergenic
      • AT5G42600.1 - [+] show detail - marneral synthase
        Distance: -3443; Region: intergenic
    Flanking Genome Sequence: 52-0808-1 - 5-prime edge 
    AATCAAGATA TAGTCTTTGA ATCCTCTAGG TTAATGGTTA AAACAAAACT 
    GAAGGTTTAA TGTGCATTAC ATTAGCGTAT AAATGAACAG TAACCAGAGT 
    AGGGTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 637189 [Map]; Strand: w
      • AT3G02880.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 52-0808-1 - 3-prime edge 
    GGGGGGGGGG GNGGGNAGGG ANNNGNANTT NAANNNTANN NAANAANTTN 
    NNNNNNNTTT TAAGNGGACG NAGTCTTTTN TCGACCGTTA CCGACCGTTT 
    TCATTNNTAA ATTTGAGGCT CAAGAATTAA CGAACAAACT AGAACAAGAA 
    CAAAGAAGAA GAAGTAGAAA AAAGGCGGGA AGTGGGGTCG ACACTATTCA 
    AGAAATTGCA ACTTGACCCC AAACAATATT CAAATCAATC AATTTAGACC 
    CCCAAAAAAT CAGTCGGATA CAGGATTTGG GGAGCCAGCA TGAATGANAA 
    ACCTCCTCAA TGAGTCTGGN GACTTNAGCC ATCGAAGGAC GACTATCTGG 
    GAACTGAGCC GTACAGCTNA TACCGATCTT CAATAAACGA ATGATGTNCT 
    CATNGCCCTN AGGNGGGTCC CTTGTGAGCT CGGGATCAAN CACATCGGAC 
    GGTGTTTGTT GCTNNGATAA CANATTGGAC CCATNTCGGC NNATCTACGC 
    CTTCTTCATT NAANCTGCTG ATGCTGTTGG AAACTCACCT GCCANGCAAT 
    GGNCCATGNT AGNACCNNGA ACCNCNANAA TTGAAAAAAG CAGNNAAAAG 
    GANNNANCCA TACTNGATNG NNTAGTNCNN TNGAAGNCNT GTANNGGGNC 
    AGGGACCGCN TNNGGTNCNG AACATNGGNC TTNTTTGNGG ANGTATTNGN 
    GGAGCNTNAN AGAGTNCGAA GGGGCNACNG AAGCCCATTC ANNAACGNCA 
    ANGGGGCAGA ACGNTNGANC CGANTGNNNG GNGAATCNCN ANCNACAATC 
    NNATAACGCT NANACNTNNT TNNGANCAGC ACCAGANCAC ATCNGCCGNN 
    NCGCCTGCAG NGTCGCCNCN TGGNANACGC GAN

AT3G02880.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G16590.1); Has 140419 Blast hits to 103539 proteins in 3753 species: Archae - 105; Bacteria - 10616; Metazoa - 37369; Fungi - 7261; Plants - 69256; Viruses - 279; Other Eukaryotes - 15533 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42591.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G42600.1

Model type
Protein coding
Short Description
marneral synthase
Curator Summary
Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral.
Computational Description
marneral synthase (MRN1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases family protein (TAIR:AT1G78500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR