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52-0819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23129291 [Map]; Strand: w
      • AT3G62520.1 - [+] show detail - transposable element gene
        Distance: 2050; Region: intergenic
      • AT3G62528.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2191; Region: intergenic
    Flanking Genome Sequence: 52-0819-1 - 5-prime edge 
    ATGTAGACTT TGAATAAGAG AGAAAGAGCC GATGATACAT AAACCGAAGA 
    AGCCAAAAAC ATCTTGGGAG AAAAAGGATA GCTTTTTTGA AACCATGGAC 
    TGATGAGAGA CATCGATCGT TTCGAAGAAG GAGGCATATA TACTCCAACA 
    ATCTCGCATC CTCCTCTGCT TCTTCTTCTT CTAGGTATGC CGGCTTCTTC 
    TATCTTTATT GCTGCTGCTA CTTGTTCTGC GGTTTATATT TATATAACTT 
    TAGGGTTCAG AATATGTAGT TATGGGGTAT GCGAATATAG ATAAGCAAAG 
    ACAGAGATTG CCAGTAGTAC AAGTGTACAA GTTACACAAC TGAGATTCTC 
    TTTTTCGTGG AGATCACGCT ACCACCGTCG TCCTCAGGTT TTTTCTCTCT 
    TCTTTGTCCT TGGTTTATTT GTTTGCTTTT TGCTTTTCTA ATTTCAGGCA 
    TCTTAGACCA AAGACAGAGA TTGCCAGTAG TACTAGTGCA GTCTTTTTAA 
    TATGTTGTAG TACGTACCCG AAAGAAGATG GATGGGCTCA ATGCCTCAAT 
    GAGGCCGAGT TTTTTGCTTG TACCAGACGA ACGTTGTGAA ACGGTAACAT 
    TTTTGGACCG TCTGAGTTAA TTCTCTTACT CGGGTTTCTT TCTTTCTTTT 
    TTCTTACAAA TGCCAAACAC ACTCTGNTCT TATCATCTTA ATTATTNCTG 
    TTCTCCGACT TGNGTCCTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23129175 [Map]; Strand: w
      • AT3G62520.1 - [+] show detail - transposable element gene
        Distance: 1934; Region: intergenic
      • AT3G62528.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2307; Region: intergenic
    Flanking Genome Sequence: 52-0819-1 - 3-prime edge 
    GTCTACATGG ATTATCGGCG AGCCTCTCTG TATGAGAATT GCATAAAGAA 
    AAAGTTTTTT TCTTTTTTTG GTTTTGTTTT CGAAGAAGAA GAGAAGTGAA 
    TGATGATGTT GGATATTGAT TAGCCTTCCA CTTGAGTATA TATGAGCAAA 
    AGGTTCTTCG AATAAAGAAA AGGAAACTTT TGATTGTTTT CTTTTTTCGA 
    CGGTTTTCTT AATTATTTGA GAACATTCGA GAGATATGGA CCGTTTCTTG 
    AGATCGGACG GTGATAACCT AAAAATCTAA ACGGTAAGTT TGTAAGATTA 
    TGTGGGATGA TGTTGGCTCC TTTAAATCAG CAGTGAATGA TGATCTAACA 
    GAAACTGACA TCAGGGTACC AATGTAATGC CATTCTTTGT GTGGTCTGGT 
    TATGAGAATG CCGGAGCCAT CAATTAATTG CTTTGGTTAG GACCAGAGAA 
    ATCATGACAT TTGTCCTCAA TGTTGATTCT GACCTGTTAA TGCACGAATT 
    AAACAAGTAC GAAAATGGGA TCTCTAGGGA AGGAAGAAGA ATCTTTCTAT 
    TAATGACGAG CCCGCGACTT ANGCGAATAG AGTAAGAACG AGCCGATTGT 
    AGATGAAAGA CGAGCTTGAG GCCGGAAGAC GATCTTGATA GCTGAACCTT 
    GTAAAAGGCT GCCTACGTAC CCTTAGAAAG GGATCAAGCC ACACGTAGTT 
    CATATCGCGA TNAACGAGCT AGGTCATTAC TGGAGGAAG

AT3G62520.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
hAT-like transposase family (hobo/Ac/Tam3), has a 1.1e-86 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)
Link
InterPro Scan - TAIR

AT3G62528.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR