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Mutant Lines
52-0821-1

52-0821-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 7615028 [Map]; Strand: w
- AT5G22794.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: 3437; Region: intergenic
- AT5G22800.1 - [+] show detail - Alanyl-tRNA synthetase, class IIc
  Distance: 1045; Region: intergenic

GNGAAAAACT AACAAAATCC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCTT GGTTCCTTCC TTCATTTTTG CGTTGGTACT 
CAACGTTTTA ATTTATTTAC TAACCATAAT TATTATTTAA ATGATGTTAT 
AGTTTTAAAT TATTTAAAAC CATCAGCTTT CATTTTTAAA AGTAAATACT 
ACTATTTATT GTCGATGTAT TACGAATGTA TCAACTCTTG TATTCGATTT 
GAAATTAATG AATAAATGAG ATGTTTTTTT AAAAAAATAC ACTCTTTTTA 
TTTGACCATT ATTAATTGTA AAATTAATAG TAATTACTTA AAATCTAGTG 
TAAAGTGATA ATGTATTTGG AAATGACATT AGAAATGGTA GAATTTTACC 
TCTTCACATT TAATTTAAAG TACCTTTTTT TGTCATCGAT TTTAAGTATT 
TATTACTTTT AATTTTCGTA CATGTGATAG CATTACCATA TGTTATATTC 
TACCGCTTTT TGTAAGGACC AATATATATA TATACATATT TTTATAATGA 
AATGATTGTC GCTTTTTTAT TCACAACTGA TTGAAAAAGA CATTAAAAAA 
TCATCTTTCA ATAGTAATTT GTAATATAAA GAAAGTACAT TGTTGAAAGT 
ATTATATATA TTTTTTTGCC CTTTTTAATC CGATTTGTAC CAAATATTTT 
TTTTGNCATC GATTNGTAAC ATATATTAAA ATGTGTTTCA TGCANCCTGA 
ATTATTGNAA AAATAATNTT TTAAACAATT ATCTNAAAT

3 prime edge [+] show sequence

Chromosome: 5; Position: 7615024 [Map]; Strand: w
- AT5G22794.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: 3433; Region: intergenic
- AT5G22800.1 - [+] show detail - Alanyl-tRNA synthetase, class IIc
  Distance: 1049; Region: intergenic

GAAAACGGTN GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCAACC 
AATGAGAGAA GCAGAGAAAT AAAAGACACA AAGAAGGAAG AAGTAAACAA 
GTTAGTTAAG CATGTAAACA GTGAAATGAG AAAGGAAACC AAAAATATCA 
GAGTAGCAAA GCAGCAAGCA AGTTAAGAAA TGAATGAAGG GATTGAGTAG 
GCAAAGATAA AGAAACAAAG CAACCAAGTT AAGCAAGCAA AGCGTACGAA 
ACAAAGCAGA GAGCAAGTAA AACAAGTTAA TGATGTAAAT AAAGAAGCAA 
AATATACATG AATGAATGAA TGAATGTATG AATGAATGAA TGAATGAATG 
TATGATTGAA TGAATGAATG AATGAATGAA TGAATGTATG TATGTATGTA 
TGTATGTATG TATGTATGTA TGTATGTATG TATGCATGNG TGCATGAGTG 
NATGCATNCA TGCATTNTGT CGGNATATCA CGCTGTCAAG GGAAAGACGN 
CATTGNCAAT GTNATTGGCC AGTGTNAATG TAATTACTCA CNACNTAACT 
TCTTTTNATT CACAANGTTC GNTGGCTATG AAGTNGGCTC CTGCATNNAN 
GTAAAAGAGA TGATTACTTC ATNTTTTNAN AGAANAAACG AGATACTNCG 
CNNCTNAAAA ATATTAAANA CCTACCTGNG TAANTGATTG ATAACTTAAG 
AACCTAGAAN GTACTNTGNA NTTNTAAACA CNGCCTCNNC GACATTCATN 
CTNNAGCNTT CATGAAGTNN TTNTCAANGN TGNGATCN

AT5G22794.2

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 146 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G22800.1

Model type: Protein coding
Short Description: Alanyl-tRNA synthetase, class IIc
Curator Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description: EMBRYO DEFECTIVE 1030 (EMB1030); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase (TAIR:AT1G50200.1); Has 15847 Blast hits to 15731 proteins in 3137 species: Archae - 486; Bacteria - 7745; Metazoa - 750; Fungi - 242; Plants - 138; Viruses - 0; Other Eukaryotes - 6486 (source: NCBI BLink).
Link: InterPro Scan - TAIR