1. Home
  2. Mutant Lines
  3. 52-0822-1

52-0822-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11184855 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -341; Region: promoter
    2. Chromosome: 5; Position: 11185357 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -843; Region: promoter
    3. Chromosome: 5; Position: 11185859 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1345; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4684; Region: intergenic
    4. Chromosome: 5; Position: 11186361 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1847; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4182; Region: intergenic
    5. Chromosome: 5; Position: 11186864 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2350; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3679; Region: intergenic
    6. Chromosome: 5; Position: 11187366 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2852; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3177; Region: intergenic
    7. Chromosome: 5; Position: 11188372 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -3858; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 2171; Region: intergenic
    Flanking Genome Sequence: 52-0822-1 - 5-prime edge 
    CATATACTAA CGGATGCGAT CATACCAGCA CTAATGCACC GGATCACNNG 
    NCNGGGCCGT AGACCACGCT NCGCCNTANA AGAGTAGTAC TAGGATGGGT 
    GACCTCCCGG GAAGTCCTCG TGTTGCATCC CTCTTTTATG TTTAACCTTT 
    TTTTTTTGGG TAAAAANTTN NNNACNCNNN ANTTTTAAAA CNGGNGGGCN 
    AAANTGGGNN NGGNAANCNT TTTGGNAANN CCNAAAAANN NCCNTCCNNC 
    AAANAANNCG GGANANGGGA NNNTTNCNNT GGATTTTTNG NNANCCCNAA 
    NTTTNNNCNT TAAANACNTT TTTGGGNCTT TTNNGGNATT GGGGNTTTTT 
    NNNGGCCCNA AANTTNNTNG TNAANNNTTG GTTTNNAAAT TTTTNANNNC 
    TTAAAANCCC GTNAAAANNA AAGGGGGTTN CCNNNNNNAG GGGGGGGNNC 
    CNNNGGGAAN GGGTNANTAA GGTTTTNAAA AAAAANTTTT TCCAATNCCT 
    TGGCTTTTCN NANGGGNGGN NATNNTCCCA NCCTTANNGC CCGGNATANC 
    NANCCGGGNC NGNGAACNAC CGGGGNCCNT TAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185242 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -728; Region: promoter
    Flanking Genome Sequence: 52-0822-1 - 3-prime edge 
    AGTATATGCA ATGCAATCGT ATATATTCTT TTTTGAAGAC TTGATGAACC 
    ATTCGCCATG GGTCCCACCC GCTATGTAGG GATACCCCAT CTAGTCTTAA 
    CGAGCTTTGA TGCATGAAAA AATTCGAAAA CAATGCTTTG AACAAGTAAT 
    TTTGGGTCCG TAATATAGCC CAAATCACGA AAATGCCCGA AAAAGTACTT 
    AAAGGTCAAA ATTTGGGGTC GACAAAAAGT CAATGGAAAA GTTCCATTGT 
    ACTGCTTCTT TCGTCGGAGG GCTGTCTTTG GGCTTTCCGA AAAGGTATCA 
    CATGCCAAGT TTGGCCTCAC GGCCTAAAAG TTATGGAGTC ATAAAGTTTT 
    AACCAAAAAA AAAAGGGTNA ANCTTAAAAA NGGGNNCCNC CCCNNGNNNT 
    NCCNGGNGGG NNCCCNTTCT NATNNTNGTT TTNCCCAAAC CCCCNTAANT 
    NGGGNNTTTT TNNGGGNNTA NCNACCCGGG NCCGTNANCC ACNTGNNCCN 
    NTTTAAA

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR