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52-0824-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185242 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -728; Region: promoter
    Flanking Genome Sequence: 52-0824-1 - 3-prime edge 
    NGTGTATGCN GTGCAATCNT ATATATTCTT TTTTGAAGAC TTGATGAACC 
    ATTCGCCATG GGTCCCACCC GCTATGTAGG GATACCCCAT CTAGTCTTAA 
    CGAGCTTTGA TGCATGAAAA AATTCNAAAA CAATGCCTTG AACAAGTAAT 
    TTTGGGTCCN NAATATAGCC CAAATCACGA AAATGCCCGA AAAAGTACTT 
    AAAAGGTNAA AATTTGGGGT CGACANAAAG TCANTGGAAA AGNNCCATTG 
    TACTGCTTCT TTCTTCNGAN GGCTGTATTT GGGCTTTGCG AANNGGTATC 
    ACATGCCAAG TTTGGCCTCA CGGNCTAAAA GTTATGGAGT CATAAAGNTN 
    TTANCCAAAA AACNAANGNT NAAACTTCAA CAANGGNGTT NCANCANAAA 
    NGNCTTTCCN NNGNNGNTCN CCNTCNTTTA TCNTGTGNNT TGTTCCTCNA 
    CCCTCCCTGA TANGTGGGNN NNTNNNGNNN NTNNNTNNNN ATNNNGAGNN 
    CNNNNACCNC NNCCTGGNCC CATTNCNTNT NTGTTCACAN ACGNNANCNA 
    GNNTCNNANN CNTGNNCAAC GNCGNANNCN GNGGNNNTNC CANAGNNNNN 
    NNNNCCGTTN NGANNNCGAT NNTCTAANCA TNNNACCAAN CCNTCACNTC 
    ATNNNCTTNG NCNTGNGAAT NNGNNNANNT CNGNGTACCN TTNCNNNTCN 
    ATNGNCTANA CCANCNCNTT ATCACNNACA NATTTATNTN TCATAANNAN 
    AGCNCATGNG CCTTCNCTNA TNCANNATAA NTATNAAANA AAAAG

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR