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52-0831-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7981792 [Map]; Strand: w
      • AT5G23670.1 - [+] show detail - long chain base2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G23670.2 - [+] show detail - long chain base2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0831-1 - 5-prime edge 
    TCTGTCTCTG TCTCTGTCTC TCAACTTTCA ATTTCTGAGA GAGTCGGAAA 
    TATTCTCCAG ATCGCCTAAG GCAAATTCGT TTTCCGATTC GGCCTAGCGA 
    CGGCGAGAGA GGAGAGGAAG AGGCAAGTTG ATTGACCGGA GAAGAAGACG 
    AAGCCGTTCT TGGAGAAAAT GATAACGATT CCTTATTTAA CCGCTGTATC 
    CACCTACTTC AGCTATGGAT TGCTCTTTGC TTTTGGTCAG CTCCGAGATT 
    TCTTCCGTCG CTTCATTGAT TGGTGGCTCA CTAGCAATCT CCAGGTCTGT 
    CTGTTTTCTC CAGTATATAA TGTACGTAGA TGTGGATCAA TGTACAAGTT 
    TGTTTAACTT TATGCTTCTT ATTCCGGTGA AATTGGCTAT CGACAGGGAT 
    ACGCGCCGAT CTGTTTGGGG CATGAGGATT TCTATATCAG GCGATTGTAT 
    CATCGGATTC AGGTAAATTC ATTATCAAAT CTATGATTCT GTTAACAAAA 
    TCGAATTGAT TATTGGCATT GTAGTTATGC AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7981682 [Map]; Strand: w
      • AT5G23670.1 - [+] show detail - long chain base2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G23670.2 - [+] show detail - long chain base2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0831-1 - 3-prime edge 
    GAGACAGAGA CAGAGATTTG AATTGGAGGA ATCTTTTCCC CTCCGTGAGA 
    TTGAGAAGGG ATCGGATCAT AAAACCATTT CTTTTCTTTT TTAATATTAA 
    AATATTTAAT AGTACAGATA ATTTATCTTT AGAACCTTAA AACGAAATAG 
    CGATTTTACG TATCTTGGGC CTTGGAGTCC ACTAATTCAA ACTAGGCCCA 
    AATGTGATAG CTGATGACCT GTTTGTTTAG AACTTTAAAA TTTAGTTTGG 
    AGAAAGAAAA AAATGAGGTT CTACCGGGAG TCGAACCCAG GTCGCAGGAT 
    TCAAAGTCCT GAGTGCTAAC CACTACACCA TAGAACCAGA TGCTTAATGA 
    GACAAAAGAA TCATATTTAT TAGTATTATG ATATATTTGG ACTTGCATGT 
    TATTTTAGTT TGATTGATTT GTTTCGGNTG CAACATTTTT AGTTGGGNNG 
    AATNGCATTT ANTNTGGNNC CCTTGTTNNC NTNNNTNGAN NNCNNNNNAN 
    GGNNGGNGG

AT5G23670.1

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, sphingosine biosynthetic process, sphingolipid biosynthetic process, pollen development; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23670.2

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 10446 Blast hits to 10416 proteins in 2172 species: Archae - 77; Bacteria - 7037; Metazoa - 738; Fungi - 589; Plants - 234; Viruses - 9; Other Eukaryotes - 1762 (source: NCBI BLink).
Link
InterPro Scan - TAIR