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52-0835-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13058426 [Map]; Strand: c
      • AT4G25580.1 - [+] show detail - CAP160 protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 52-0835-1 - 5-prime edge 
    GGAAGAGGCG TGTATTACCA ATGGTGGAGC CAAGTGACTG TGTAGAGTCT 
    TGAACAGATT CTGTAGACTT TTGCGTCACT TCTTCCGTCG TACCAGCGAT 
    CCAAGAAGTA ACAGCTCCTC TCTGCTNCTC CACTACGGTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13058542 [Map]; Strand: c
      • AT4G25580.1 - [+] show detail - CAP160 protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 52-0835-1 - 3-prime edge 
    CCTCTTCCTG TTAAACAACG TTTTCGGCTT TTGACGGTGG TAATGACTTT 
    TAATTTGGTG TAATGATGGT TAGGGAATAA AATGGGAATT ACGGGTTCGG 
    GAGGAGGTGA GGCAGGCCAA CAAGGTTCTA TGCCTTTGCA AAAGAGATTT 
    CAAGAATCTG GAAACTGAGA TTCTGCTTCT TCTTTTTAAA TGTATGGTTT 
    GTTAATCCTT TCTAATGTGC GTTGTGGTTT GATGATCCAT GGCTTATTTT 
    GATGTATCTA CTACTAGTAC CATGTAAAAG TATGAATAAA TTGAGTTAAA 
    TAGTATTGTA ACTTAGTACA ACACAAAAGG AGTAAAAATT ATCGTCGACA 
    GCAGGGTTCG AACCTGCGCG GGCGAAGCCC AACAGATTTC AAGTCTGTCT 
    CCTTAACCAC TCGGACATAT CGACTTCTTG TTTAACCACG ACGAGATAGG 
    AAATATTATT CGTTTATTTG AGAGTTACAC AACAAAGCTA CAAGGTTTGA 
    ACTTCTCTCC CAAACGGAAG TAGAAAGAAA AGAATGTTTA TAAAATGAAT 
    AAGACATAAA GAATT

AT4G25580.1

Model type
Protein coding
Short Description
CAP160 protein
Computational Description
CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR