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52-0844-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8250197 [Map]; Strand: c
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -6840; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 1181; Region: intergenic
    Flanking Genome Sequence: 52-0844-1 - 5-prime edge 
    AAGCAGAAGA TAAGTTTTAC AGGCTCAAGG TTCTTTTACC AAACAGCACA 
    AGTGTGACAC TCGCACTTAC CAACCCTGAA CTTAGAATGT CAATGAACAA 
    TTTTGTTAAC TTGGTGAAAG AGGAATATGA GAAAACCTGT AAAAATGGTG 
    TATTGTCCGG TAAGAAGAGG AAGCGGGTTG ATTGGAATCT GGCTGCCAAA 
    TATTATCTCG AGTTTAACGG AGAAAAGATT AAAGAAATCG TTCGATTTGA 
    CAAGTTTAAG CCTGATTTGT GCAATGTACT CCGTCTTGAT GTGAGTTGTT 
    GTTTTTCATC TTTTCATTAT GCTACTTGCT CTGTTTGCTA CTACACAAAC 
    TTATAGCTTT GAGACAGCTT TTGCGGATCT GATTTTAAGT TTCTCATTAA 
    TAATACTTGT AATAGTTAAC ATATAATTAC AAGTTTATGT GTCTTTAAAA 
    TACAAGGTTA TTACTTAGGT CCGAGTATGA ATTTCTTCGT TTTTGTTGGT 
    TTTGTTTATA GATTTGTAAG ATGGCGCGTA CAAAGAACCC GAGCCAGAGT 
    GAAGAGTACA ATCCTTCGGA AATAGTAAAA GTCGAAGAAC AAGAACAAGT 
    GTTGCTTGGA GATGGTAGTG AAGAAACTGT GAAATTTTAA TGGTATGTTT 
    CTGTGTACAA CATANTANAA ATTTGGTNTA CCTCANATGA TTTTGTACTT 
    GGCACAACTT GATTTGGATT GNAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8250313 [Map]; Strand: c
      • AT5G24270.2 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -6956; Region: intergenic
      • AT5G24280.1 - [+] show detail - gamma-irradiation and mitomycin c induced 1
        Distance: 1065; Region: intergenic
    Flanking Genome Sequence: 52-0844-1 - 3-prime edge 
    TTCTGCTTCA TCATCATCTA GACTCAATAC TCTCCCGACC GATCTCTTAT 
    TACTCATCTG AAATTCAAAG CACATGATTC AGAAGATAAG CTACCAAACA 
    AAAAACTCAT AATACAAAGG TACATAGAAA TTAACTAACA AACTTTGCTT 
    TTAGTTGGTC TAAAAACAAG AATTGTAAAA GGCATGCATG AATACGAGTT 
    TTATACATTT TATTGGAAGT TTGTTACAAA TTGGGTATAA AAAATTGTTT 
    GGTGACTAAG AAAGCAAATA TACTGAAAGC TACATATACA TCTACTAGTA 
    CAAGTGCATG TAAACACAAC CACACTTGAA AAAAAAAAAA ANAAAACNTN 
    NGGAAANGGG GNATTTTNNN GTTNTNTTTC CAAAAAAAAA AAANANNCCA 
    AAAGGGGAAA ACNAANGNGN CCAAAAAANA NGNCCNTGGG NNNNTTTTTT 
    TTNNNNCCCG NCCCNC

AT5G24270.2

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Curator Summary
encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
Computational Description
SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
Link
InterPro Scan - TAIR

AT5G24280.1

Model type
Protein coding
Short Description
gamma-irradiation and mitomycin c induced 1
Computational Description
GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR