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52-0867-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 52893 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0867-1 - 5-prime edge 
    AGGATGATGA TGACTTAGAC AAGGTATTCA CATTGTAATG CTGCAAATTC 
    GATAGCTTCA GAATTGACAT AGACATGAAC AAGGTACTGG TTTTAGTGCT 
    TGCAGGCAAT AGCGCTTTCT CTACAGGGCT CTGTTGCAGG AGGCTCTCGT 
    ACGAAAAATA CGAGAAGCGA TAAAGAGGCT GCAACTATGA AGAAGAAAAG 
    ACAGGGTTTT TTTTTTACAT NAAGTNTTAG NGTNTTACTG TTNCTTAACA 
    GNCTAGGAGG ATGNCCTTGA NGNNCATTNG NCTNGTCTNA TTCGTAGGAA 
    TTGATGACCA ANATNCANAT GACCCAANAT GAATNGGNCN TGTCCTTNTG 
    NCAGTTNGAN GGTAATATNT CNATNGGNCA ATTNCTATCT TTNGGGTTNN 
    AANGGTTTTT AACTCCNTTG AGTCTNTGCN ATTTTTGTCA AAAGGGGGAA 
    AAGGGTTCNT TNCTCGGAAA NATGNGGCNA AAATGGCANC GGGGCNTGAC 
    TTCNCNTGGN CANAAAAGGA ATTACAANAC ATGATTCGTT CCTTTGACAT 
    GGCCAAGGAC GGAAAGGNGG GTNCTAAGTT GAAGGTNTTC ACGTTTNTTA 
    NANAAACATT TTTGCTAAAC ATNTTTAATT TTGGGCAGCT AANCTGTACN 
    ACCGCGTCCC GCGTTCATAA AAAGGCCAGG TTGTTTTNGG ANAAACTANC 
    CCTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 43666 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 52-0867-1 - 3-prime edge 
    ATCATCCTCA CCAAGGAAAA CTGATGTATT CAAAATCTTC CTAGATGAGA 
    CTCTTCTCTT GGATGCAGAG GACTGGTTCT TAAATACAAG TCACAAGAAA 
    CCAGAGTAAA GATCAAATGG CACATTAACA TTAAACACAA TTACAAATTG 
    CCTTCAAGCC AGAGAGTAAC CATCATTCAC TGCTTCATTC ATCGGATACA 
    AGTTGACACA AGCAAAATTG TTACCTTTCT TTTACGAGTT GAATTACACA 
    GAAACTCCTC GTCTTCGTTG TAACGCCCGC GATCCTCAAT AGGATCGTTG 
    GCTAGGACTT GGTCCGGGAG AAGAAGGTGG AAGTCTCGGA CAAGTGAGAA 
    AGAGCTGGCT ATAAGCTCGG ACAAAGGGGA AATCATGCAG GCTAAGCTAG 
    GATCGTAAGG AAATCACTTG GGTCAGCTCG CCCAAAGCTC AAGCTCAGCT 
    GGAAGGAGTG ACAGTTACTC AGGTCGAGTG ACAGTCCAGC TCGGGCAGCT 
    GGACGAGTGA CGGATGAGCT CGAGGTAGCT GGACGAGTGA CGGACGAGCT 
    CGAGGTAGCT GGACGAGTGA CGGACGAACT GGGCGGTTAT GGGCGAAGAG 
    ATACAACTCT TCGGAAAGGT GCAACTCTTC GGAAGGGCGC AACTCTTCGG 
    AAAGGTGCAA CTCTTCGGAA AGGTGCAAGG AACGGATGTG TTGATTCGGG 
    AAGCATNCAT TCGCCCC

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR