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Mutant Lines
52-0885-1

52-0885-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 10334525 [Map]; Strand: c
  - AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
2. Chromosome: 5; Position: 10374960 [Map]; Strand: w
  - AT5G28450.1 - [+] show detail - Chlorophyll A-B binding family protein
    Distance: -770; Region: promoter
  - AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 52-0885-1 - 5-prime edge
```
GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA GAACTCTTAT ATTCTGCTCA ACCATTCTCG 
ATTCCTCCGG CGTTTTTCTT ATGATGTTGA CCCACGGCCG GAAATCAAAT 
CGGAGAGCCA GGAATTTGTA GTAGTCAAAT TTGTGAAAAC TCTTCAAAAT 
ACCCCGCAAC ATGATTGGGC GTCGAGCGAG TCGCTAAGTG CGCTTGTCGT 
ATCTTCTTCT TCTGCTTCTC CTTTAGTATT CTCGCAAATC ACGCGGCGGC 
TAGGATCGTA TTCTCTAGCA ATCTCGTTCT TCGAGTACCT GGATGCGAAG 
TCTCAGTCTC TGAAACGCCG TGAAGAATCT CTCTCCTTGG CGCTTCAGTC 
GGTCATTGAA TT
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10334526 [Map]; Strand: c
  - AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
2. Chromosome: 5; Position: 10374959 [Map]; Strand: w
  - AT5G28450.1 - [+] show detail - Chlorophyll A-B binding family protein
    Distance: -769; Region: promoter
  - AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 52-0885-1 - 3-prime edge
```
NTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
TTCTGGCGCC GGGAAATTGA TAGCATGATA CTCATTGTCT AAGGTTTTGA 
AAAAGACGGC CACCGGGAAA AGTGAGACGC GAACTCTGTT GGCGAATT
```

AT5G28370.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28450.1

Model type: Protein coding
Short Description: Chlorophyll A-B binding family protein
Computational Description: Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 1998 Blast hits to 1946 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28460.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR