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52-0892-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1298260 [Map]; Strand: w
      • AT4G02930.1 - [+] show detail - GTP binding Elongation factor Tu family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0892-1 - 5-prime edge 
    TCCAGAAGGA GGAGGTTCCG AAGGTAGAGG AAGAGAGATC ATCTCCACCG 
    ATAGAATGAG AGATCGAGTA AGAGGAAGTA ATAGAAGCAC CACAGCGAGA 
    GTAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1298144 [Map]; Strand: w
      • AT4G02930.1 - [+] show detail - GTP binding Elongation factor Tu family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0892-1 - 3-prime edge 
    CTTCTGGAGA TCCATGGCCA CTTTTACTCG AAAGTTAGTT TTCTTTCCAT 
    TTTTTGCTTC TTTTTCGCTC TTCAGATCGG AAAGTTGGAA AATTGGTTGG 
    TGATTCTGAT TGTGATTCTC TGCTNCTCCA NTANCCCATG GGAACNAAAC 
    CGCATGTAAA TGTNGGAACT ATCTGGGCAT GTTGATCATG GCAAGACCAC 
    TTTAACTGCT GCAATCACAA AGGTGCTTCT TTTTGTATTT TGGTTACATG 
    AAACTTATTG TCAAAGAACC AGTTTTTTTA AAGTTGATCT TGTGATCTTA 
    CTTATGTTTT AGGTTCTTGC TGANGAGGGC AAAGCTAAAG CTATTGCCTT 
    TGATGAAATT GATAAAGCTC CTGAAGAGAA GAAGAGAGGA ATTACTATTG 
    CCACGGTC

AT4G02930.1

Model type
Protein coding
Short Description
GTP binding Elongation factor Tu family protein
Computational Description
GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink).
Link
InterPro Scan - TAIR