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52-0895-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7114386 [Map]; Strand: w
      • AT5G20950.2 - [+] show detail - Glycosyl hydrolase family protein
        Distance: -3075; Region: intergenic
      • AT5G20960.1 - [+] show detail - aldehyde oxidase 1
        Distance: -2352; Region: intergenic
    Flanking Genome Sequence: 52-0895-1 - 5-prime edge 
    CNTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCAC CGTGTGGCTA AGCTCATTAG TATCTATGTA 
    ACGTGTTCCA TTAGTTTCTC TTTTTAAGAG CTCGGTATGT TTTTGGGTTT 
    TCGTTGTACA ATATAAAACT TTTTTTATTT GGTATAAAGT TTAACATTAA 
    ACCAAAAAAA AAAAANNGNN NNGGGNNNNT TNGGNCNAAA NTTTGGGGGN 
    CTNTTTAAAN TTTTNGGNCC NANNAANANN ANNTTAANNT TTTTTNCCNG 
    GGAANTCNAN AANNAANTTT TNTTTTTCCC CCCCNAAANT TTTGNNNAAA 
    AANNNNTTTT NAAACCGNAA AAACNTNNAA AATTTNNNNG NNNGGGGAAA 
    ANTNCCAAAA AANTCCNGNA AAAANTTNCC CCCCCCCCTT NAAANCCNNA 
    ANAACCCNGG AAANNNTTNC CGGNTTTNTN NNNNGNGGGG GGTTTTNAAA 
    ANNTNNCCCC GGGTNAAAAA AAAANCNTNG GGGCCCCNTG NNNTNNAACN 
    NCNNTNGGNN AANAAAANNN TTNCNNAAAA TTTNNTTTTT NNNNAACCCC 
    AANAANTTTC CCGTAACCTT TTAAAAAAAG GCCCCNANNC ANNAANCCCC 
    NGTTTAAANG GGANNNANGG TNGGCNGTTT TACCCCCTNC NNANNTTTNA 
    AAAAANNACC CCNNGGNCCN TGTTGGCCCT TNGGGGTTTT ACNAAAANAA 
    AAAAANCCTN NNACNCNNNC TTNANATAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6977407 [Map]; Strand: c
      • AT5G20630.1 - [+] show detail - germin 3
        Distance: -1414; Region: intergenic
      • AT5G20635.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 1806; Region: intergenic
    Flanking Genome Sequence: 52-0895-1 - 3-prime edge 
    NTNCCCGGNA TCTNTGNCCG TNATGGNTCT AACNTNNGTN AGTTCCNGCT 
    CGGCANCNGC AACTAGGTTC ACGGCCAAAT CCGACTATCC ACCCCTNTAT 
    NGCNCTCTCC GACTCNACCN TNTCTACNTT GATCCCCCNC AACGTCGACA 
    AANCTCTCAT GAAGCTCCAC TACGGTGATC TCTTTGCTNC TCCACTAGNA 
    ACAATNCCNA GTTACCCCAA CAGCAAAAGA AGTTGCAAAA TAAAACGTTT 
    TATAAATCCA ATTAGAGCCA CCATTAGCAT ATTATAAATG TAGATTACAA 
    TTAATCAACC AAAACATGAT TAATCTAAAT ATTAAGATAT ACATATCGAT 
    CTGTCNACTT TTATTTGTNC CANGAAAATA ATAGAAACNT GAAAGATATA 
    AATACCAGCG ACAACAAGCG GAGAGTGTCT GAGAAGAGAT GAGTATNGAA 
    TTCCCCTAAT GCNTCGAGCC ATATGCTACA TTT

AT5G20630.1

Model type
Protein coding
Short Description
germin 3
Curator Summary
Encodes a germin-like protein. Its transcripts are more abundant in RNA from leaves collected in the evening, suggesting some kind of circadian regulation.
Computational Description
germin 3 (GER3); INVOLVED IN: response to cold, peptidyl-cysteine S-nitrosylation; LOCATED IN: extracellular matrix, apoplast, cell wall, nucleus, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 1 (TAIR:AT1G72610.1); Has 1486 Blast hits to 1484 proteins in 101 species: Archae - 0; Bacteria - 34; Metazoa - 0; Fungi - 23; Plants - 1414; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20635.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20950.2

Model type
Protein coding
Short Description
Glycosyl hydrolase family protein
Computational Description
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20960.1

Model type
Protein coding
Short Description
aldehyde oxidase 1
Curator Summary
Encodes aldehyde oxidase AA01.
Computational Description
aldehyde oxidase 1 (AO1); CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: aldehyde oxidase 2 (TAIR:AT3G43600.1); Has 18277 Blast hits to 17619 proteins in 1295 species: Archae - 420; Bacteria - 10771; Metazoa - 1021; Fungi - 121; Plants - 280; Viruses - 0; Other Eukaryotes - 5664 (source: NCBI BLink).
Link
InterPro Scan - TAIR