1. Home
  2. Mutant Lines
  3. 52-0896-1

52-0896-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10486459 [Map]; Strand: c
      • AT5G28510.1 - [+] show detail - beta glucosidase 24
        Distance: -2437; Region: intergenic
      • AT5G28515.1 - [+] show detail - transposable element gene
        Distance: -5535; Region: intergenic
    Flanking Genome Sequence: 52-0896-1 - 5-prime edge 
    CTCACAGGTA ACTAAATCAT ATAGTGCATG AATCATCCTA AATACAAAAA 
    TAAGTTTACT AAACAATTAT ACTTTGATTC ATATTGGAAA CACAAACACG 
    AAAGAGACAA CAGTAGGTAA GTAATGTATC ACACCACACA TAATTGACAC 
    GTACCGCTTA ATTCAAAAAT GGGTTTAAAG CCTCAAGCCT ATAAAGGTTT 
    ATCTACTTGT CGTTCATAAG AAAGAAAAAA AAGCAACCTA ATTCTATTTA 
    GGGGTGAACT TTTAAAAAAT TTTAAAATGA AAAATCAAAA TCATTAATAT 
    ATATGGACAT TTTCCGCAAG CAATTTCGGC TTGTTTAGAT CCCATTTAGC 
    AATAAACGGG TAGCTCAATT AATTCAATTC TAATGTGAAT GTAAATTTCC 
    GCTAGATTTG ATTCACAAGA TAAAAGATTG CGATCAACAA CAAGTATCCC 
    CTACAATTCT TTGAGAATAT TGATTTTCTC GGAGAACTAA TATTATCATA 
    AATGTGTTGT TGGATGAGTT CAGATTTAAA CACTTGCAAT AAAAACTTGG 
    TTTATGTTAT GAACAAAGTT CAAGTTAAAA ATTGGCGAGG TAAATTCGAC 
    TTACATGCAT GAGCTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10486575 [Map]; Strand: c
      • AT5G28510.1 - [+] show detail - beta glucosidase 24
        Distance: -2553; Region: intergenic
      • AT5G28515.1 - [+] show detail - transposable element gene
        Distance: -5419; Region: intergenic
    Flanking Genome Sequence: 52-0896-1 - 3-prime edge 
    CCTGTGAGTT AGTTACTTAA TTTCCAAAAA TTTGGAACGT GAGTCACATG 
    TCAAAATTCT AATGAGCAAG AGCAACATAC ATTCTTAAAT GTGACTTTGT 
    TAGTGGTGCG TGCATGATTC ATGAATCATC CTACGTTTTA GAAAATAGTA 
    AACTAATAGA GATTTCAATA CGTGTGAAAG TAAAATAAAT ATATAAATGC 
    AAATGTAGGG TTTGCCAAAA AGAGAGCTTT CATATCTATC CCAACATATA 
    ATAAAGTATA TTTTCCTCTT TCGTTTCACT TCAATCAAAG TTTTTTTTTT 
    ANCAAGNGCA AAGANAACNC NANCCATNTT TACTTGTTCA CNCAAAACAG 
    GTTCATTNGG NCCTTAAAAG TAGTANCTAA CTAATAGTNC CGCCNTAATC 
    GTTTCCACCA AATTACAAAC TTTTNTGGAA NCCCATGCAA NACTAATNTT 
    NTNTGGTTTC AACCGTNGGA CCGAGNGTCA TGNGTTNTNC TAATCAAAAC 
    ATNTTAANAC TNTTTAACGT ANCTNCAAAT TTTGCATANA CAAANAAATT 
    GAAAAGCT

AT5G28510.1

Model type
Protein coding
Short Description
beta glucosidase 24
Computational Description
beta glucosidase 24 (BGLU24); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G09260.1); Has 11366 Blast hits to 11018 proteins in 1472 species: Archae - 140; Bacteria - 7863; Metazoa - 718; Fungi - 202; Plants - 1442; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR