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52-0898-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 181383 [Map]; Strand: w
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-0898-1 - 5-prime edge
    GTNAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TGACCAAGAC CAGCATCTGA GAGTATGGAG ATGGATTGTT
    GTAATATTTT GGGCATAGCC ACATGCCACC TGCTTCCAAA AACAACCCAT
    ACTCATTATT AGTTCCCACT ACAATTATTC CATGCATAGA TGATTATATT
    ATTTCCTTTT CTTATTATAA CATTTATCCA TAAAATCTGT AAGTAAGAAA
    ATGATTGGAC TCACTGACCG GTAAGCAACA AGAGCCCATA TGAGACCGAT
    TAGACTGGAG TACGTGTTTG GGTTTCTGAT CAGCTTTCTC CACACCATTA
    TCAATATCAG TCGTGTCATC ACACTTGTCG GCGGCATATG TGTTCCGTTG
    TTGCCGCCGC CATCTCCACC AGCCGCCTCT AGCTCCGCCG TGGAATTAGA
    CCCCATTTTA TTCAGCCCTG CTGTAGCTTT CTCTATCTCT CTTTCTCCCT
    CTCCACTATC AAGACCGCCG ATATCATCAC CACCACCTGA GAAAACCAAA
    AATCATGAAT ACATACAAAA ATAATAGTAT TCGAATAATA ATAAAATTAA
    ACCAACAAAC CTCTAGCATA TTATTTATGT AAACAATTTT CCGCAATTTT
    AGCTAAATAA TATTTGATGA CAAAAAAAAA AAAAAAAAAA ACCTTTNNAT
    TTTTTTTTTG GGGGGGGNNA AAAAAACCCC CNCCAANTTT TTTTAACCCN
    TNNNNAAAAN NNNCCCNNNC CCCNNTNNNC CCC
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 181329 [Map]; Strand: w
      • AT2G01420.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron3 (CDS)
      • AT2G01420.2 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0898-1 - 3-prime edge
    GTCTTGGAAT GGCTATGTTC AGCTTAGGTA AACACTAACC TTGCTTCATG 
    CAAATCTANA CTTGTTTTGA TGATGATCTA ATCTTTAAAG TTGGGTTCAA
    ATTTGTTCTC ATCTTATCTG TTAAAAAANA TTCATTTAAT GCAAAGTGGG
    TCTGTGTGTC TNNTCAATCG TAGTTGTCCA GCTTGTAATT GGTAAAAGTC
    ATATAAACTG TACAAAGCAC TTACCCAAAG AGAGAATCCT GACCCTCTGA
    CCCAGACATG TTGGTGTGTC CGGTCCCCAC GCCGAGTCCC CACTGGCTCT
    GTCTACTTAT TTGGGTCTCA CCAAGTAGAT GACCTAACTC TTTGCTGTCN
    ATNT

AT2G01420.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1811 Blast hits to 1602 proteins in 498 species: Archae - 31; Bacteria - 1046; Metazoa - 12; Fungi - 10; Plants - 485; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01420.2

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452).
Computational Description
PIN-FORMED 4 (PIN4); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: root development, pattern specification process, auxin polar transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G70940.1); Has 1823 Blast hits to 1616 proteins in 502 species: Archae - 31; Bacteria - 1046; Metazoa - 18; Fungi - 10; Plants - 487; Viruses - 2; Other Eukaryotes - 229 (source: NCBI BLink).
Link
InterPro Scan - TAIR