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52-0905-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7981135 [Map]; Strand: w
      • AT5G23665.1 - [+] show detail - pre-tRNA
        Distance: -263; Region: promoter
      • AT5G23670.1 - [+] show detail - long chain base2
        Distance: -506; Region: promoter
      • AT5G23670.2 - [+] show detail - long chain base2
        Distance: -522; Region: promoter
    Flanking Genome Sequence: 52-0905-1 - 5-prime edge 
    TTGCGATTCG CAACAATGAC ATATCCTAAT TCTTAGAAAT CCTTATTTGG 
    CTGCTATAGA AGAACAACAT ATTTTTTTCT TTTTCCACCA GCCATTCTCC 
    CATCTACTCG TTGGTGCAAT ATTCACATGG AAAACAGTTG GATTTAAAGG 
    AGATTACAAA ACTTAATTCA TNNNATCGAA CTCTATATAT GGAAATTAAG 
    GGTGACATAT TAAATGCAAT TCAACCCAAC TAAAAATGTT GCAACCGAAA 
    CAAATCAATC AAACTAAAAT AACATGCAAG TCCAAATATA TCATAATACT 
    AATAAATATG ATTCTTTTGT CTCATTAAGC ATCTGGTTCT ATGGTGTANT 
    GGTNAGCACT CAGGACTTTG AATCCTGCGA CCTGGGTTCG ACT

AT5G23665.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gln (anticodon: TTG)
Link
InterPro Scan - TAIR

AT5G23670.1

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: photomorphogenesis, sphingosine biosynthetic process, sphingolipid biosynthetic process, pollen development; LOCATED IN: endoplasmic reticulum, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23670.2

Model type
Protein coding
Short Description
long chain base2
Curator Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
Computational Description
long chain base2 (LCB2); CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class-II, pyridoxal-phosphate binding site (InterPro:IPR001917), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: serine palmitoyltransferase 1 (TAIR:AT3G48780.1); Has 10446 Blast hits to 10416 proteins in 2172 species: Archae - 77; Bacteria - 7037; Metazoa - 738; Fungi - 589; Plants - 234; Viruses - 9; Other Eukaryotes - 1762 (source: NCBI BLink).
Link
InterPro Scan - TAIR