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52-0910-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6687181 [Map]; Strand: c
      • AT5G19780.1 - [+] show detail - tubulin alpha-5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0910-1 - 3-prime edge
    GCCTTCATTT CCTCGATCTC CGTCTTCCTC CTTCTCCGTC TGTCGCAGAG 
    CATCGCTCGA ATTAGGGTTT CTGCTGAGAG AAGATGAGGG AAATCATTAG
    CATTCATATC GGACAAGCCG GGATCCAAGT CGGAAATTCC TGCTGGGAGC
    TTTACTGTCT CGAACATGGA ATCCAGCCCG ACGGAATGAT GCCGAGGTAT
    AAACCCTAAT TCTCTCTTTT ATACTCTGTT TCTGTGGATC TNAACGTTTT
    TGAGAGACGA ATGTTTTACT CTGTTACAGT GATACTACAG TTGGTGTTGC
    ACACGATGCG TTCAATACTT TCTTTAGCGA GACTGGTGCA GGGAAGCATG
    TTCCTAGGGC TGTCTTCGTT GACTTGAGCC TACTGT

AT5G19780.1

Model type
Protein coding
Short Description
tubulin alpha-5
Curator Summary
Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.
Computational Description
tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR