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52-0920-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185780 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1266; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4763; Region: intergenic
    2. Chromosome: 5; Position: 11186282 [Map]; Strand: c
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1768; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4261; Region: intergenic
    Flanking Genome Sequence: 52-0920-1 - 3-prime edge 
    GGTGGGACCC ACGGCGAATG GTTCATCAAG TCTTCAAAAA AGAATATATA 
    CGATTGCATT GCATATACTA ACGGATGCGA TCATACCAGC ACTAATGCAC 
    CGGATCCCAT CAGAACTCCG CAGTTAAGCG TGCNTTGGGC NGNGAGTAGT 
    ACTAGGATGG GTGACCTCCC GGGAAGTCCT CGTGTTGCAT CCCTCTTTTA 
    TGTTTAACCT TTTTTTTTTG GGTAAAANTT TTNNNNNNCN NTACTTTTAA 
    ANCNGGGGGG CCAACCTGGN CTNGNNANCC NTTTNNGNAA NCCCNAAAAA 
    CNCCCCTCCC NCAAAAAAAC CNNNNNANGG NANCTTTNCC TTNGCTTTTT 
    GGNCANCCCN AANTTNNNNC NTTNANGNCN TTTGTGGGNN TTTTNAGGAN 
    TNGGGGNTNT TTNNCGGCCC CAANNTTANT NGTAAANANT TNGTTTNAAA 
    NTTTTTTTTN CATAAAACCC TTTTAAAAAN NANAGGGGGG NTCCCCNNNA 
    NGGGGGGGNA NCCCCNGGNA AANGTNTTTN NNNTTTTNNA AANAAAATTN 
    NTNCNATTGN GNTNTTNTAN ANNNCNNGGG GGGGANNNNN NCNCNNTNNT 
    NNNTANNNNN NNNCGNNGNN NCNNNC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR