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52-0921-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9080046 [Map]; Strand: c
      • AT5G26000.1 - [+] show detail - thioglucoside glucohydrolase 1
        Distance: 0; Region: exon11 (CDS)
      • AT5G26000.2 - [+] show detail - thioglucoside glucohydrolase 1
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 52-0921-1 - 5-prime edge
    TGAAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCTCTC TGTAGTCATC TCTGTTTCCT CAGTAAAGTC
    ATCAAGTGAG TGGATGATAT ATACTCTTCT TCTACTCTTG CTCTTTATAT
    ATACATAATG ATTAACTGTT CCTGTTTGTA GGGAGAAGAA TGTCAACGTG
    AAAGGATATT TTGCTTGGTC TCTTGGGGAT AATTACGAAT T
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9080099 [Map]; Strand: c
      • AT5G26000.1 - [+] show detail - thioglucoside glucohydrolase 1
        Distance: 0; Region: exon11 (CDS)
      • AT5G26000.2 - [+] show detail - thioglucoside glucohydrolase 1
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: 52-0921-1 - 3-prime edge
    AGAGATAATC AATCCNCTTG TAATCGGCAG TAGCCTTCTC AAAGTCCTCA 
    TCACCTGGGG TACTAAATCC TAACATGTAC CAAGTAGACA ATATTTTGAT
    TCAATTTCTT GGACCAACTG TGAATTAATA CACTAAAAAT GTATAGTTGA
    AAGAGAGTAG AACTCACCAT TCTCAGTGAC ATATATTAAA GGGTCACCGT
    AAGTGGTTTT GAAGTAATCC ATTACGTAGT AAATGCCTTT TGGGTAGTAG
    TAACTGGCTG CATTGAACTG AGAAAATAAA GTATATACAT CAGAAAAAAG
    AAAAAATGAA CGTTATTTTT GCTTAAACAT AAATGTAAAA AACGGATAAT
    ACATACCGGT GGACCAGGAG CATGACCAGT TGCATTTTTA GCTGTGAACA
    CAAGGGTGAA ATAATTGATG GTCACTAAAA ATGTTATATA GAAAGATTGT
    AACTAANGAG AAATAGANTG GTACATGTGA GANTTGTGCG TGAGTC

AT5G26000.1

Model type
Protein coding
Short Description
thioglucoside glucohydrolase 1
Curator Summary
member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.
Computational Description
thioglucoside glucohydrolase 1 (TGG1); FUNCTIONS IN: thioglucosidase activity, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glucoside glucohydrolase 2 (TAIR:AT5G25980.2); Has 11138 Blast hits to 10810 proteins in 1458 species: Archae - 132; Bacteria - 7708; Metazoa - 712; Fungi - 191; Plants - 1422; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26000.2

Model type
Protein coding
Short Description
thioglucoside glucohydrolase 1
Curator Summary
member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.
Computational Description
thioglucoside glucohydrolase 1 (TGG1); FUNCTIONS IN: thioglucosidase activity, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glucoside glucohydrolase 2 (TAIR:AT5G25980.2); Has 10598 Blast hits to 10348 proteins in 1443 species: Archae - 123; Bacteria - 7528; Metazoa - 688; Fungi - 189; Plants - 1364; Viruses - 0; Other Eukaryotes - 706 (source: NCBI BLink).
Link
InterPro Scan - TAIR