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52-0922-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6926052 [Map]; Strand: w
      • AT4G11380.1 - [+] show detail - Adaptin family protein
        Distance: 83; Region: intergenic
      • AT4G11385.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1035; Region: intergenic
    Flanking Genome Sequence: 52-0922-1 - 3-prime edge 
    TGTGTCTCCN NNGNNTGTTN AGCTNNNNAG CCGANGCNTC ACTCGNTAAA 
    AAGTGCCAAC NATGTNNTCA CTCNGANGCN CTNCTTTGTG TGGGCTATGC 
    ATATCCTGAN AGAAACTCCA ANTTGCNCAC TTGNGTGACA TANCACATGC 
    GTTNTGATAG CAANANCTGA TATNNTCTTT TGACAATCCA TTAAGTATGA 
    GAANNTGCAT TTTAAAATTA TNTTCCTTNT AAAATACAAN ANTAGCCGTC 
    TTTGGTCTCT ATCCCCAAGT GTNCCTATCA CCTNGAAAAA ATGTGTGAAA 
    GTNTCNGGCG TTGTCGACCA ATAGGCATCA TCAACGGNTC CANTGNAGCT 
    AGATCACTGA TTGGTCCNTG GTGATCGNGG TCGCTTGGAT GGTGCNNGAT 
    CNTACTTGCC TANGNTCAGA TACCANCCTT NCCCNGGGTC NANATNTCNN 
    AAAGCACCAN NANCNGCGGN TNCGCANNCC GGANNNGNCN NNANANGTAN 
    GCGAGAATNA NAGAATNCCA ANNCTCANTG GGNNNNANGN GGCNCGTCNC 
    ACGGNNTGCG NNCATCTGAT CGCNCNNCCG NTACANCCNT TNACGACCCC 
    CGTNCNTNGG GNCCCNCTNC NCGAANCCCN GNANNTATNN NTACAAACNT 
    TTCANNNNTN GNGGCNNACN NCCCCNCNAN NNNANTGGCG NTTCGGNAGT 
    CNGGCNTNNG AATAGNAGGN TNAAAAGCTA CNTANTNNNA ANCCNNNACT 
    CCCTCNGTCN NACCNTAANA NTAANAAAAN AAATAAA

AT4G11380.1

Model type
Protein coding
Short Description
Adaptin family protein
Computational Description
Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 3548 Blast hits to 3463 proteins in 290 species: Archae - 10; Bacteria - 21; Metazoa - 1495; Fungi - 876; Plants - 441; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11385.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR