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52-0924-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6926068 [Map]; Strand: w
      • AT4G11380.1 - [+] show detail - Adaptin family protein
        Distance: 99; Region: intergenic
      • AT4G11385.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1019; Region: intergenic
    Flanking Genome Sequence: 52-0924-1 - 5-prime edge 
    TTNANAAACT AACAAAATCG GTTATACGAT AATCGGTTAT TCGGTACGGT 
    CGACATGCAA AATTTATCGT GGGAGGAGTG TTGGGAAACA TATCTCCACG 
    GCTCCACCTA TATCGTTTGG TCCAGGTTAC CAGGTACTAT AGTTCTGATC 
    TCTTTTGCTT GCTGCTTAAG TTATCTTCAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6925989 [Map]; Strand: w
      • AT4G11380.1 - [+] show detail - Adaptin family protein
        Distance: 20; Region: intergenic
      • AT4G11385.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 1098; Region: intergenic
    Flanking Genome Sequence: 52-0924-1 - 3-prime edge 
    TGTCTATCCA AATTGTGTTT AACTTAAGAG CCGATGCCTT ACTCGCTAAA 
    AGGTTACAAC TATGTTTCAC TCTGATGCAA ACTTTGTGTG GCTAGCATAT 
    CCTGAAAGAA ACTCCAAATT GCACACTGCA TGACAAAACA CATGCTTCTG 
    ATAGCAATTC TGATTTTTCT TTTCACAATC CATTAAGTAT GAGAATTTGC 
    ATTTTAAAAT TATATTCCTT TTAAAATACA AGAATAGCCG TCTCTGCTNC 
    TCCACTAA

AT4G11380.1

Model type
Protein coding
Short Description
Adaptin family protein
Computational Description
Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1); Has 3548 Blast hits to 3463 proteins in 290 species: Archae - 10; Bacteria - 21; Metazoa - 1495; Fungi - 876; Plants - 441; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11385.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR