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52-0925-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 71263 [Map]; Strand: w
      • AT2G01050.1 - [+] show detail - zinc ion binding;nucleic acid binding
        Distance: -1379; Region: intergenic
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: 1995; Region: intergenic
    Flanking Genome Sequence: 52-0925-1 - 5-prime edge 
    CATCAAGGGG CACTTTTTAA AAACATTTGA CGTGTTCCAA CACTTAAAAA 
    ACATTAGACA CTTTTCCTTG TTAAAATGAC TATTATACCC CAAAATTATT 
    AGTAAGGCAT ATAACTGACG ATTTTCTTAT TTTTAAAGTC CAATTTCTCT 
    TTAATCTTTT ANAAAATCTC AATATTCNAA ATCAAAATTG AATCTCTTAG 
    GGTTTCTCAT CATCTACCAT ATTTCTCAAC CATCTATCGC TTCTCTGCTN 
    CTCCACTANA GACGGAAATT AC

AT2G01050.1

Model type
Protein coding
Short Description
zinc ion binding;nucleic acid binding
Computational Description
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31430.1); Has 369 Blast hits to 365 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 367; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR