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52-0927-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 285037 [Map]; Strand: c
      • AT4G00695.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: intron4 (CDS)
      • AT4G00695.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon5 (3UTR)
      • AT4G00695.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 52-0927-1 - 5-prime edge 
    ATAAACTAAC AAAATCGGTT ATACGATAAC GGTCGGTACG GGATTTTCCC 
    ATCCTACTTT CATTACTCAT ACTCATGAAT AGCAAAAAGA AGAAGAGATG 
    TTCGCTAACA AGCAAAGATG TTAAAACCCT CTCCGAAAAA AAAAAACCAA 
    ANNNNCTTTA AANCANNCAN NATTTTGGGN GGGGNNAAAA NNNANTNNNG 
    GNACCCNNNN CCAGGGAANG NACCNNCCTT NGTTTTNCCA NNNCCNTTNN 
    TTGGNAAAAN CNGNGGNNTA NGGGTTTNGN ACCCCTTTTT NNNNGTNNCT 
    NGCCCNTNGA ANNGGGNNGG TNCNNCCNGG TNCNTTAAAN CCCAAAAAAA 
    NGNCTTTNAN NTTTTGGGCT GGGANTTTTN NCNAAGGGNC CTNCCCNNAC 
    CTTTTNAAAN TTTNNCCNAN NCCNANCNTT TNCNGGGTTT TTTTTTTNNN 
    CTTTTNGNGG NAAATTTNAG CNAAANTNNC CNNANGGTNN NNNGNTTNNT 
    TNNNNNNCNT TTNNANNANG TTNNANNTTT CCAAAGGGNN GNNTTTTNGN 
    NNANNCNTNG GGNNAAAAAA NGNNNAANTT TNANCTTTTT TTTTNNCANN 
    CCCNTTTACC NNANCCCNNG NANAANCCCN TTNNNTNGGG TCNNAAAATA 
    AAAAATAANT AGCTTCCCAN NACCAAATTN NNGGNTTTAA AAAACCAAAA 
    GGGGGNGGAG GTTAAAAAAT ACCCGAAAAN TCGGGNCTTT TTAAAAANAA 
    ATTGGGAGGC TCCTAAATNT TNNNAACCCT TN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 285037 [Map]; Strand: c
      • AT4G00695.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein m...
        Distance: 0; Region: intron4 (CDS)
      • AT4G00695.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon5 (3UTR)
      • AT4G00695.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskelet...
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 52-0927-1 - 3-prime edge 
    ANTTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    GACTAACATA CTCATACACT CAAAAATATC TAACGAGTGT AATATTATGT 
    ATTAGCGAGT GTTTTACAAT TGACTGCATG CATTTTAGAA TTATATCTTG 
    ATTGAGTGAA CAAAACTCAA AAGGTCTAAA AAGAATTAGT TCGAATCGGC 
    TGAAAACNTT CGAGTTCCGA GAGTTCCGGT TTATTACCGG TTTACACTTA 
    ACCAATCTAT AAATTGGTAA GCAATTCTAT CGACTAACAT AAACCCTTGA 
    TAAGTTAATA GATTATTGTT TATACGTATT CCTACTAGAG ACGTGTTGCG 
    AAAGTGATAC GTCTCCTAAT TAAAGAGAAA ACGAGATTTA ATCGTTATTA 
    AGAAGAAACT TCAAAGTCTT TCATGGATTT TTAGACTCTG AAGTAGACGC 
    TTTTGTCTTC TCTGTACGTA TATAATACGT TCTTATTTTG ACTTTTATTT 
    GGCGTTTTTT TCCAATTTCG TTTTAAAAAT TCCAAAGGTA GCTAACTTTT 
    GGCACTCAAC TGCGACAAGC TGTTCAAAAA TGATACATCT GTTACATATG 
    ATTTATTAAA CTAAGACATT TTTATAATAT ATGTCTTCAG ATATTGATTA 
    TAACGTCCAA AAGAAAAACA GAGATGCTCT GATTTTTATA ACCCAAGAAA 
    TACGTTACCC TGACGTTAAT AATTGCCTAA CAAACGATTA GGCCCAACAA 
    AAAAACGTCT TATAAGTTTA ACCTTTGGTT TGGGTCAATG C

AT4G00695.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: spindle pole, microtubule organizing center; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00695.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G80245.3).
Link
InterPro Scan - TAIR