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52-0930-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8120240 [Map]; Strand: w
      • AT5G24030.1 - [+] show detail - SLAC1 homologue 3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 52-0930-1 - 5-prime edge 
    CGTAGGGTCT CTAATTCAGG ACCTTCTAAG GCGTCACACT AACGGTCCAC 
    AGGCATGGCT TCATTGGTAT TCAAATTTTG GTTATCCCGG TTTGGTGCCT 
    CCGGTTCAAC AGAAGCTGGT TTTCTTGTGA ATTGTCTCTC ANGTTTCCCC 
    GACCANNTTT TTNTTAGTTG TACCNGTCGT CTCAAANCCC AGTCCGCAGC 
    CTGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8120124 [Map]; Strand: w
      • AT5G24030.1 - [+] show detail - SLAC1 homologue 3
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 52-0930-1 - 3-prime edge 
    ACCCTACGGG TACGTACCTA CGTTTTTTTT GTAGCTTTTA CATTTGAATT 
    GCATTCATGT GGTAAATTGT TTTAATGACC TTTTTGCGAA AATATATCAT 
    TACTAGAAGT CAGAAGTGAC ACGTTTTATA ACTCTCTTTT ATTAACGAGT 
    GACATGTTTC AATTATAACN CNCTTTTGTT TTTCCTACGT CGCAGCCTCA 
    ANAANAGATC GTTCTACCAA ATGATAAAAA GTGGCCGTTT CTTCTCCGTT 
    ACCCCATTTC CACCTTCGGT ATGTGCCTAG GAGTGAGCAG CCAANCCATA 
    ATGTGGAAAA CCCTAGCCAC TGCAGAGCCA ACCAAGTTCC TCCACGTACC 
    CCTCTGGATC AACCAGGGTC

AT5G24030.1

Model type
Protein coding
Short Description
SLAC1 homologue 3
Curator Summary
Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.
Computational Description
SLAC1 homologue 3 (SLAH3); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 2 (TAIR:AT4G27970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR