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52-0942-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11121750 [Map]; Strand: w
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: -1155; Region: intergenic
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -4401; Region: intergenic
    Flanking Genome Sequence: 52-0942-1 - 5-prime edge 
    CGGGATAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATTT GATACTATCC TTCTTGTAGC GTAATTATAA 
    TAGAGACCCA CCTAAGACCT AACCACCTTA GACTGCTGAA TTCTTTGTGC 
    ACAAAAAGAA AAAAAAAAAA CCAAAAAANN NGGGGGNANT TTTTTANGCN 
    TTNGGGGTNC CCNCNAAAAA AAAANNCCNT TNAAANNNNN GGGGGGGNGG 
    GGGCCNAAAA ANNCNTGGNT TTNANGTTTG NANCTNANGT TAAAANNTNA 
    ANTCCCCNGN AAAANGGNAN TGGGAAANGN GGGGGNGGNA NNNANCCTTN 
    CCNCCAANCC CATTTTAACC CNGGGGGANG GGGGNNNAAA ANNNAAANTN 
    NNTTNGANCN GGGGAANCCC GGNTGCCCCG NNANGGGGCC NAANNNNNNN 
    NCCCCNCAAA AAANTGGGGG GGANCCGGCC GGGGCGGGNN NCCCCNCGGN 
    CCCNNNNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11121747 [Map]; Strand: w
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: -1152; Region: intergenic
      • AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: -4404; Region: intergenic
    Flanking Genome Sequence: 52-0942-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTACAGTGA 
    CGTCTTTATT TTCGTCTCCT TTCGTTTGAA AAAATAAAGG AAAAGCAAAG 
    AAAACAAAGT TGCTCTGACT ATTTTTTCTT TGTATATGAG AGAAAGAAAA 
    CAAAGTTGCA TTTGTTTAAA CTCTCAATTA TTACTCACGT AGAAAGAATG 
    TATGCATATA GAGAAATTAT TACGTAGTTA TACAAAGTCT TTTATATATG 
    ACATGTCTCT GGATAATTAT TTGTTTACTA TCCATTCGTT GGCTTATCAC 
    GTTAGATGGT TATAAGGCAG TCGCTACAAC TAGGCAGCGA AACTGCTTTG 
    ATCACCATCT ATTGTTTTTT TTTGTCCATA ATTTGATTAA AGAAATGAGA 
    ATATAGCAAC AAATGATTGC ATTTTTAGTT GAAATTACAA TACAATCATT 
    GCAATCGCAC ATCCTAAAAA ACTAATTGAA ATTAATATCC ATATAAGGAA 
    GAAACTCATT AGTGTCGACA TGCATTGGAA CAACGACTTT GTTTTTGTTT 
    GACTTTGATT ATAGCCGCCC TTAACAATTT AAAAACAAGG TTGGTTTTGA 
    ATGACATTCT CATGATAAAA CTAATGAAGT TCGTGTAGAT GTTTGGTTAT 
    TCCATCTGTT TATTGGGAGA TGAAAACGGA TAAACTATTC AAGAAGGNCA 
    TATTCATTAA TATAAACATC ATCATAATTC CTAATCTTTT GACTTAAATT 
    GNAGTCACAT TTATCAATAT TGAGTCATTT CATTA

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR

AT4G20740.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Link
InterPro Scan - TAIR