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52-0945-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6315002 [Map]; Strand: c
      • AT5G18930.1 - [+] show detail - Adenosylmethionine decarboxylase family protein
        Distance: -1679; Region: intergenic
      • AT5G18940.1 - [+] show detail - Mo25 family protein
        Distance: -10784; Region: intergenic
    Flanking Genome Sequence: 52-0945-1 - 5-prime edge 
    GTNANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGAA TACGTGCATA TATACGAAGA AAATAATTTA 
    AAGTTTTATG TGCATTAGCG ATTGTTTGAC ACACAAGCCA CTAAAATTGA 
    TGATTCTTGC AGACACTTGT TCCATTGCCC TTTCAAGATC TTTTGTGTCT 
    TGTCCACGAT ATAGTATGTG TGTGTGTGGC TAATCAGATA TATTATTTAA 
    TATGGGCTAC GTAAAGATGT GTCATGTGTA CCTTTGTTTT GGCATGATGA 
    GTGATACATA ACGGGTGATT GGAACCAATG TACGAGAGCC TCGTAACCGA 
    ATTGTAAACA CGGTTTCTTT TTTCAGTTTT TTTTTTTTTT TTTNGCNAAA 
    AAAANGGGNA AAAANGGGNN TTNGGNCCCT TTTNNTTNNN GGGGGNTTTT 
    GGGGGNCCNA AAANTTTTTN ANCCCNNNTT TTNAAANNNN NNNCCNGGGG 
    NNGNANNCCC GGGNNNNNTN TTTNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6182712 [Map]; Strand: w
      • AT5G18590.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G18590.2 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -6; Region: promoter
    Flanking Genome Sequence: 52-0945-1 - 3-prime edge 
    GGCAATCACA TACTTGCGCA GAAACANACA AAACATGTTG CCATAACTCA 
    ACGAACCATC AAAGACATCA AGAGACGGTC TCTTTCTCTC TCTGTCTCTA 
    GTCTCTACTC TCGAACGGGC TAAGCTCAGA TCATTACAAG ATTCGCTTTT 
    GTGCTGAACT TGGTCCCATT CATTAGTTAT TTGCTTAAAG ACAACATTTT 
    TATATGCTTC CGTTAGCTAA ATCCATCACT CCCCCCTTCA ATCATTTCCC 
    TGCTCTGCTG GCCCCAGAAA CAGCTTGCTA GGATTCACTA CGACGTCGTT 
    TCGGGTTCGT CTCCAGCTGT GGATAATGGC TATTCTCTGA AATTGATTCT 
    ATTCACTATT TTGTTACTGG GGATTTTCTC AGCAAACCAA AACAGGTTAG 
    TTTTGGCCTG TTATGTGGAT CTCTGCTACT C

AT5G18590.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G18590.2

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 4 (TAIR:AT3G05420.1); Has 9365 Blast hits to 4668 proteins in 321 species: Archae - 14; Bacteria - 334; Metazoa - 3669; Fungi - 969; Plants - 2222; Viruses - 6; Other Eukaryotes - 2151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G18930.1

Model type
Protein coding
Short Description
Adenosylmethionine decarboxylase family protein
Computational Description
BUSHY AND DWARF 2 (BUD2); FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G18940.1

Model type
Protein coding
Short Description
Mo25 family protein
Computational Description
Mo25 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mo25-like (InterPro:IPR013878), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Mo25 family protein (TAIR:AT5G47540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR