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Mutant Lines
52-0947-1

52-0947-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 5; Position: 16693305 [Map]; Strand: c
- AT5G41750.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: -604; Region: promoter
- AT5G41750.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
  Distance: -604; Region: promoter

CTTATGGCTT CTTCTTTTCT TTTGAGTTTC ATAGTTTTCT AAAATAATAA 
CTTATAAATT TGCTCTAACA GTATGCGTTG ATTACAAACA GTCAGATTTT 
CAAACCGGCA ACGAGCAGCC ACCTGAACAT ATATATATGG CCTCATGTGT 
ACTACAAGTC TCGTGATTAA CCCGAATCGT CTCCTCAAGT ATTTAGCTCA 
GTATACACAA AGAACGGAGT AGAAGAAACA TCAGTTGAAT ACGATTGTGG 
ACTGTGTAAA GTAATTCACT AAGACCGATG GAAACATTAT TATGATTCTA 
ATTCAAGATC ACAATATAAC AAGACCTTAC TTAGTACTTC AACAGGATTA 
TGATTATAAG ATCAATCAAT CTGGCAAAAA TAGTGAAAGT ATTATGATCA 
GTTCATGGGT TACTTCTCGA TGGTTGGAAG GTGTGAGCTG CAATGCTTCT 
GTTTTCTCAA ATGCTATCAA TCTTCTTTCA TAGGTTTTGC CTTTTATGCT 
CACAACAGAA GGCACTGCTC CAAGTACCTA GAATGGTCTC ATTGTGTGGA 
CATAGTTTTG ATCTCTGGAG AATCAGGTGC CGCGTCGAAT T

3 prime edge [+] show sequence

Chromosome: 5; Position: 16706662 [Map]; Strand: c
- AT5G41760.1 - [+] show detail - Nucleotide-sugar transporter family protein
  Distance: -218; Region: promoter
- AT5G41760.2 - [+] show detail - Nucleotide-sugar transporter family protein
  Distance: -218; Region: promoter

GCCATGAAGC CTACATACAT AAGAGATGGC GTAAAACAAT GAAAGTAGAA 
ACATTAGTAG GAATAACATT AAACATTTAA ATGATTCGAA AGGCAGAAAT 
TCAAACTCCA GCGTTTGCAA AGAAAGTTTG TTTTTTGATA TTCAAATGTA 
GCTCTTCAAA ACTCAACTCC TCCCATTCAT CAATCAGACT CCTTNATTCT 
TCAAGTTTTG AAACATCAAC CTTGAAACGA TGTCACCGCC CAAATTTTAT 
AATCGGAAAG TTACCAATTT ACCTTGGCCA CTCTTGGGTG TTTAGAAGAA 
TTCTTTAGGT TTGTTAAGGC CCATAACTTT GATAATAGTG AAACCCAAAG 
GCCCAAATCT CAAAATCTCG CT

AT5G41750.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Computational Description: Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G41750.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Computational Description: Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G41760.1

Model type: Protein coding
Short Description: Nucleotide-sugar transporter family protein
Computational Description: Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: endomembrane system, integral to membrane, Golgi membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189), UDP-galactose transporter (InterPro:IPR004689); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G35335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G41760.2

Model type: Protein coding
Short Description: Nucleotide-sugar transporter family protein
Computational Description: Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, CMP-sialic acid transmembrane transporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: endomembrane system, integral to membrane, Golgi membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189), UDP-galactose transporter (InterPro:IPR004689); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G35335.1); Has 1068 Blast hits to 1053 proteins in 185 species: Archae - 0; Bacteria - 3; Metazoa - 567; Fungi - 123; Plants - 182; Viruses - 0; Other Eukaryotes - 193 (source: NCBI BLink).
Link: InterPro Scan - TAIR