1. Home
  2. Mutant Lines
  3. 52-0955-1

52-0955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8490292 [Map]; Strand: c
      • AT5G24740.1 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -589; Region: promoter
      • AT5G24740.2 - [+] show detail - Protein of unknown function (DUF1162)
        Distance: -589; Region: promoter
    Flanking Genome Sequence: 52-0955-1 - 5-prime edge 
    AGCGGGAGAC TCAAACCCGA GAGTTTACGA GAAGCCTAAA GAGAATTACA 
    AACAAAAGAC ACACAAAAAT GGGTAAAACA TACCCACATA ACTAAGTTTT 
    TAAACGATCT TAGCAAACTG GAAAGAAACA GATCAAACTA ACAAGGAACT 
    AATAGTAAGA GAAATTCCAA TNCTNNATAA AATACTAAGA AGAGAAAAAC 
    TGAATCTCTC GCTTAACCAT CATCCCCATT AACCTTTACA TTTAACGTGT 
    GACATGGCGA AGCCATGAGT GCAATCCCAT CAACCCACAA TCAACCCGAA 
    ACTTCTACAA GAGCCTCAAA CATCGAAGCC ATGAGTCCCA AAAATTTGCG 
    AGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8502412 [Map]; Strand: c
      • AT5G24770.1 - [+] show detail - vegetative storage protein 2
        Distance: -188; Region: promoter
      • AT5G24770.2 - [+] show detail - vegetative storage protein 2
        Distance: -188; Region: promoter
      • AT5G24775.1 - [+] show detail - transposable element gene
        Distance: -905; Region: promoter
    Flanking Genome Sequence: 52-0955-1 - 3-prime edge 
    GAAGAGATGG GTGTACTGTG AATGATATAA GAGATGAGAC ATGTCGATAA 
    GAAATGTGAG GTGTACAAGA ATAGACGTTA AATAATTGTT ACGTAAAGTC 
    GTAACATTAA ATAATTCAAT AAATTAGCAA ACATATATAG CNTGTATCAC 
    TATTCACTAG TTGTTGACAA ATATTTGAAT AACGATTTTC ATGCCCGAGA 
    TTGGGAACAG TTTCTAATTG GCACCAAGAT TTTCCACAAA AAGTTGTATC 
    TTGGTGATAG CTATAGTTTC AACGATAATT GTCCAGTCTT CCAACAATAT 
    ACTTATTTTT TTCTAATGCA TATAACCTCG TGACGAAATA TGTAAGTAGT 
    TTAATAGAAT TTTTATATAT CAAAAAGTAT ATATAGTGTT GCAAACCAAG 
    TTGTGGTAGA ATAGTAGTTT CCATTTGAAA TATGAAGTCT TCATGTGCGT 
    ATAGTTTAGG GACTAAAATT CTTCAACTAT TTAAATTATT CGGTCCGAAA 
    GTACCCTGGT TAACAAAAGA AAGAAAAAAA AAACTNTTTT ACCAAACAAC 
    ATATACTTTA ATCAACTCTA AAGGGAATGT AGTTAAAACT CGAATCATAT 
    TAANATGATG TGTTCCCAAC TAATATCAAT CCTAAGGATT AGTCGGTTTA 
    AACATTGGTT TCATCATTTT ACGTAAAGGA ATGAGTGTTT ACCNCTACCA 
    CCTTACCGTA ATGGNGANAA NATTTTAT

AT5G24740.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
INVOLVED IN: protein localization; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1); Has 2219 Blast hits to 1322 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 1077; Fungi - 361; Plants - 231; Viruses - 0; Other Eukaryotes - 548 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24740.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF1162)
Computational Description
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1).
Link
InterPro Scan - TAIR

AT5G24770.1

Model type
Protein coding
Short Description
vegetative storage protein 2
Curator Summary
Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.
Computational Description
vegetative storage protein 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: vegetative storage protein 1 (TAIR:AT5G24780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24770.2

Model type
Protein coding
Short Description
vegetative storage protein 2
Curator Summary
Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.
Computational Description
vegetative storage protein 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519); BEST Arabidopsis thaliana protein match is: vegetative storage protein 1 (TAIR:AT5G24780.2); Has 337 Blast hits to 336 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 337; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24775.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 1.6e-99 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)
Link
InterPro Scan - TAIR