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52-0956-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10378046 [Map]; Strand: w
      • AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 742; Region: intergenic
      • AT5G28463.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1400; Region: intergenic
    Flanking Genome Sequence: 52-0956-1 - 5-prime edge 
    CNTTNAAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCAT AGGGCATTCA TCGAGGGATT TGACGAAACT ACCCTTCGCC 
    TTAATACTCC TTGGTTTGGA ACTTATTTTG GGTTTTTGAC TTGGGTTTGG 
    GCATTGGGCC AAGTAGGCCC AATCCGACCC CTAACAACTT GTACNGTGCN 
    GTATACNGTA TTCTTTTTCC CTACAAATAC ACTCTAAGAA AACGAGTAAT 
    CACTCCACTT AGATACATAC AGCGTGTCCA TCTAGTTTTA GTCTTTTCGA 
    TCTCCGACCA ATTCAATCTA AGGCAAAGAT TAATGTAGAG AGAGTTTTAC 
    TATGTCGTAA ATCTAGAAAG CCGCCCAAAA AGATCTTTGA TCGCCAATTC 
    AGTGGGCTGC TCCACGTGTC AATACTTTTT CACATGTTAA TTTTGTTGGA 
    TTACTATAAA CATAATGAAT GACCTTGAAG AACTCTTTGG AGCTAAACCC 
    AACGACCAAC CCATTACGGC ATTACCATTC TCTCTACATG ATTTTCTTCC 
    TCTTAAACTA ATTTAAAATG GAGAAAGACA AAATTTGAAA TTTTATTTTC 
    ACGTGATTAG ACCATGATTA CGTTTCGGTC GACACGCAAG TAATTTTAAA 
    ACTTAAAACA TATGATTTGA AAAAGGTAAA ACACCAAGTC ATGGTAAACA 
    TCTCCCCCCG AATCTTATAT CAACGTGGGT CTAATAATAG AGTTCGTAAG 
    ACTTGAACTT GNTAATTTGN TACTCCGTTG AATCTTTAAA CACTCTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22767153 [Map]; Strand: c
      • AT3G61510.1 - [+] show detail - ACC synthase 1
        Distance: -1423; Region: intergenic
      • AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 1764; Region: intergenic
    Flanking Genome Sequence: 52-0956-1 - 3-prime edge 
    AGAGGCTACA CGCATAGTGC TATAAATACC GAATAGCATG TCTTGTCACG 
    AGGGGGGATT CCGCCAGGAC ACTTAGAGAC AAAGAATAGC CCGTCTCAAG 
    TAGCTCGTCA GCTCACCCTT CTCAAGTAGC TCGTCCGTCT CAAGTCGCTT 
    GTCTCGCCCT TCTCAAGTAG CTCGTCCGTC TAAAGTAGCT TGTCAGCTCG 
    CCCTTCTCAA GAAGCTCGTT AGCTCGCTCC TCATCGCCAA ACTCTTCAGC 
    TCGCCTTTAA GCTCTTCAAG CTCCTCGGCT CGTCCTCAAG CTCCTCAGCT 
    CGTCATCAAG CTCCTCAGCT CGTCTTCAAG CTCTTCCCAT CACTCAGCGA 
    CCATCTCCTC GCCTAGCTGT CAGCTAGTCA GATCGTCCAA CTCGTCTAGC 
    TATCAGCTCA TCCCTCGACT GCAAAAC

AT3G61510.1

Model type
Protein coding
Short Description
ACC synthase 1
Curator Summary
Encodes a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family. The gene is transcriptionally active but enzymatically inactive. The predicted amino-acid sequence of ACS1 is missing the highly conserved tripeptide, Thr-Asn-Pro (TNP), between Ile204 and Ser205. Introduction of TNP into ACS1 restores the ACS activity.
Computational Description
ACC synthase 1 (ACS1); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 2 (TAIR:AT1G01480.1); Has 22999 Blast hits to 22998 proteins in 2818 species: Archae - 808; Bacteria - 15898; Metazoa - 560; Fungi - 631; Plants - 1241; Viruses - 0; Other Eukaryotes - 3861 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61520.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28460.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28463.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR