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52-0958-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1849696 [Map]; Strand: c
      • AT4G03912.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G03914.1 - [+] show detail
        Distance: -697; Region: promoter
    Flanking Genome Sequence: 52-0958-1 - 5-prime edge
    TTACAGGCTT CNTANCCGAN NAGGTACTCA TTTNTAAGTC GNANGTAGCC 
    NCNTNGAAGG GGGNTGGTAC TACATGGCTG ACTTCCACGT GAAGAGATCC
    ACTGGCCCTA TCAAGTATGC AGTACTGTCT CTTTCANATC GAGTGTACTT
    GGCCAACAAA AATGTGGCCT ATAAGTCCTA GATCTACTCG CTCCTTCATT
    GACTGCATGT ACCCAAATGA GTTACAAGAT GCCGGTGAAC ATGACAAACA
    ATTTGCTACA GGTAAGTTGA TGAACTATTA AATATTGTCA ATTTGTTTCT
    ATATTTATCA TTCTTTAATA TTCTTCTCTA CCTTCTTGGA AGATGCAATG
    TGAGTCATAT CAAGTGTCTC AAAATTCAAG TCGTTTCCAT ATGTCTTTCG
    TCAAGGAGAG TCTGACTATC ACGTCAGATA TGTAACTTTC AACATTAAAG
    ATAATCTGTA AGTGTAGACA TGTCATATTT CAAATATATT GAATATAAAA
    TTCTAGATTT AAATTTTTTG GAGTTTAATA TGTGTTGGTT TGGAATCTTG
    TTTGCTTTAG CGATATGATC ATANCCTGTG TNGCTGNGGA GAGGATGTGT
    GAGGTATTAA CTTCTAAGNT TTATCGCCTT ATTAGTGCTC CAACTTACAA
    CTACGAGCCA CTTGTGGTTA TCAACCCGGT TATGGAGGAT TGTGGAATNT
    GAAGGTGTGT CAAACTCTGC TACTTTACGT ATATACTTTT AACTGTAATT
    GNAATTTTCT TTATCTNACC CTAACCCTAA TTTCATATAT CTAT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1030961 [Map]; Strand: w
      • AT4G02325.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1181; Region: intergenic
      • AT4G02330.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -1452; Region: intergenic
    Flanking Genome Sequence: 52-0958-1 - 3-prime edge
    GGCTAAAGTA TTGGACGACT TTGGGACATA AGCAATAGAG ANAGAAGCGA 
    AAGAATTACA AAACGAAGCA ATATCATGGA TGATTTTCTT TGAGATTTGA
    AAGATATTTC TTAGCATTGA TAAGTGAGAT CAAGACTTGA GAGTCCAACA
    ATACCGTGAA AGAGGCTATA TCCGATTGAT CGGCTGCCAT TTTAAGGGCA
    TTGCGAAGAG CAAGTGCTTC CGTTACTAGG ATTGAGCCTA ATTTGTTCAA
    TTATTACACC TTTATAATAT GTGAATCTAC AATGCATTAT CATAAATCAT
    TTTTGTGTTT GAATTTTTAC TACACATACT TATCATTAAC ACACCTGCAT
    TTCCAGTAGA AAAATATGAG AAGA

AT4G02325.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02330.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
ATPMEPCRB; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system, cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G02810.1); Has 2755 Blast hits to 2700 proteins in 321 species: Archae - 8; Bacteria - 597; Metazoa - 1; Fungi - 199; Plants - 1923; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03912.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT4G03914.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G30520; unknown protein
Link
InterPro Scan - TAIR