1. Home
  2. Mutant Lines
  3. 52-0965-1

52-0965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10016256 [Map]; Strand: c
      • AT5G27980.1 - [+] show detail - Seed maturation protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G27990.1 - [+] show detail - Pre-rRNA-processing protein TSR2, conserved region
        Distance: -780; Region: promoter
    Flanking Genome Sequence: 52-0965-1 - 5-prime edge 
    GGTGGAGTGG AGTGACGCAG CCGCCATTCA AGCGGCCGAG GTTAGAGCTA 
    CGGGGCGGAC CAATATCATG CCCGGCGGTG TTGCGGCTTC AGCTCAATCA 
    GCCGCCACTC TTAATGCTCG TATCGGCTCT GACGATACCA AGACTACGCT 
    AGCCGACGTT CTCACTGTAA GTAATAGCAC ATAAGACGTG ATACATAAAA 
    TGCTTGAATC CAATATCTAG TTTTATTTCT TTCATTTTCG GGTTCTAATG 
    TTTTTTTTCG ATTTTGGGAA ACAATGATTA TGAAAGGGAG CGAGTAGCAA 
    ATTACCATCG GATAAAGCAG CAACGAGAAA GGACGCAGAG GGAGTGACTG 
    GCGCCGAGAT GAGGAACGAT CCTCATCTCA CTACATACCC AACCGGTGTG 
    GCTGCCTCTG TCGCTGCCGC CGCTCGGATC AATCAGTCCA AATGATGCAA 
    TTCTTCTTTC TTGTTATTGA GAAGCAAGTT TATATAAACT TAAACAAATG 
    TATATATGTT GATGTATATA ACATTCTCAA GTTTTTAATT TTACCTAATT 
    AAATAGGCAT ATACGTTGAA ACACAAATTT ATTTNCAACA AGATCAGAAT 
    GAAATAGCNC AAGTTAACCA AACATCGTCA ATGGACCAAG TCCCCAANGC 
    AGGTTAGGAT GGTCTAAACT GGNTTGATGA TCGAACCGNG GNTCTCAAAA 
    TCANTTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10016372 [Map]; Strand: c
      • AT5G27980.1 - [+] show detail - Seed maturation protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G27990.1 - [+] show detail - Pre-rRNA-processing protein TSR2, conserved region
        Distance: -664; Region: promoter
    Flanking Genome Sequence: 52-0965-1 - 3-prime edge 
    ACTCCACCGG CTTATTCCCT GCCGTGAGAA CCGCTGCCTC TAGAGCCTCT 
    CCAATTGTTA TGGTTCCTTC CGATTTCAGA GGATTAGCTA CCACCTTTTT 
    CTGGTTAACT TCTCCCTCCG CCTACAAATT TAACGTTCTA ATTATACAAA 
    TTATGATATT AACACAACAG CGATGATACT AGCACAAACC ACTAGATTAT 
    ATAGTCACAA ATCAACCTGT TCACCGGAGG CCTCGGCTAC AACACCTTTC 
    TCTTTGTCCT CCGCCGCCTT AATGCCTCCC TCCGTTGTCG AAATCTTCTC 
    TGCNTCTCCT CTAACATCAG CACAATCTAT AGGTTTCTGC AGCTGTTCTT 
    CGCTCAT

AT5G27980.1

Model type
Protein coding
Short Description
Seed maturation protein
Computational Description
Seed maturation protein; CONTAINS InterPro DOMAIN/s: Seed maturation protein (InterPro:IPR007011); BEST Arabidopsis thaliana protein match is: Seed maturation protein (TAIR:AT3G22490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G27990.1

Model type
Protein coding
Short Description
Pre-rRNA-processing protein TSR2, conserved region
Computational Description
Pre-rRNA-processing protein TSR2, conserved region; CONTAINS InterPro DOMAIN/s: Pre-rRNA-processing protein TSR2, conserved region (InterPro:IPR019398); BEST Arabidopsis thaliana protein match is: Pre-rRNA-processing protein TSR2, conserved region (TAIR:AT3G22510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR