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52-0966-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8358039 [Map]; Strand: c
      • AT4G14550.1 - [+] show detail - indole-3-acetic acid inducible 14
        Distance: -8020; Region: intergenic
      • AT4G14560.1 - [+] show detail - indole-3-acetic acid inducible
        Distance: -3019; Region: intergenic
    Flanking Genome Sequence: 52-0966-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCGCCAACTC TTATGGGCGA AATATTCTTC 
    GCCAGATCTC TCACCTTATC AAAGACAACC CTTATGTGGA ACATACATGA 
    TCTATAAATT CTACCAAGAA AGTGTTAAGT CATTATGTGA ACCCTAAGAA 
    TAACTCAAAG ACTGCATTTT AGCATGTCCA AACAATAGGT TCAAAGAGGT 
    TTCACTCCTG AAGAAAAATT CATGATAAGA ATTTAGATAA TACCAGTAGC 
    GATTTGGTGA ACAAGATGAT AACGTTGAGC GTCTGGCCGA GAATTTAGCA 
    TCATATATCA ACAATCACTC AATATTACGA TAGATGACAC ATAGTTAAGA 
    TAATGATTCA CACAAAAATG AAAACGTTGA AGGATAAGGT GGATTAACTT 
    ATGAAGAATA TCAAATGGTT GTTATCTACT GCGAATATTG CATAGGTATG 
    ACGAATAAAA TACTTCGTTA GGTCAAAAGA ATTTTCACCA AGAGGATTCA 
    ACGAAAACTA CATAAATCAT CCTAATAATA TTTTTTACAC GAGAACTAAT 
    GCCGAAAACA TGCATGCAGC GTGCCTAGTT TATCGTCAGC ATGAGAAGTC 
    TCATGAACAT CGTTTTCATC CTAGATTTGC GCATACTTAT AATATTTTTG 
    GCTAGGGTAA CAACTTAAGT ATCCATATAT ATTTGGGTAG TCAATAGTCA 
    TGGTCTAAGA CTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8358103 [Map]; Strand: c
      • AT4G14550.1 - [+] show detail - indole-3-acetic acid inducible 14
        Distance: -8084; Region: intergenic
      • AT4G14560.1 - [+] show detail - indole-3-acetic acid inducible
        Distance: -2955; Region: intergenic
    Flanking Genome Sequence: 52-0966-1 - 3-prime edge 
    GAAAGTCAAC CTGAACCGAG TATATAAAAA GTGGTGGTAA AGATGGCGCA 
    CGTGCATTTC TTGAGTTATG GTATATGTAG ATAAATGATG TGAATTGTGA 
    CTTAAATCTT TGTGGCTCAG CTNTTTGTCC TTTCTACGAT TTGATTTTGG 
    ACCATACCTT TTCAATACGT CCAAATCNGT NTTNNATTNN TCACACGAGT 
    GTAAATTGNA CCCACATTGT AACATCTCAC ATGCAAAGTT TTTTTTAATG 
    CAAGTTAAAT GCACACGCTT ATACATCTAT GCTACTCCAC TAAC

AT4G14550.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 14
Curator Summary
IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19.
Computational Description
indole-3-acetic acid inducible 14 (IAA14); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid 7 (TAIR:AT3G23050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G14560.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible
Curator Summary
auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein.
Computational Description
indole-3-acetic acid inducible (IAA1); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 2 (TAIR:AT3G23030.1); Has 1898 Blast hits to 1895 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1895; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR