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52-0967-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16381414 [Map]; Strand: w
      • AT4G34215.2 - [+] show detail - Domain of unknown function (DUF303)
        Distance: -112; Region: promoter
      • AT4G34215.1 - [+] show detail - Domain of unknown function (DUF303)
        Distance: -107; Region: promoter
    Flanking Genome Sequence: 52-0967-1 - 5-prime edge 
    GCGTGGACAC TAGAATCTTG GTCCGGTTTG GGTCGGTCTG TTTAAAAGTT 
    TGGTTAGGAA GTTAGACCGA GTTAATTTTA AGTGATTCCC GTTGTGTTGG 
    TTTAATTGGC TTCATCGGTT AAGATTCTAA TTTTTATATA GCTTTTTGGT 
    TGTGATATAA CATAACAAAA CAGTGAAACA CACTCTAAAC TCTAAAGTAA 
    NAGTTAGTAT TATGCNGAGG GTAAAGTAAG CATTAAGCAA CACATCTAAA 
    ACATACATNA CANATAACTN NNTATATTGC CANAANNACT TANGCTATAC 
    NAATNNNGAA ATAAAANTNA NAAACAAANA TNNGTNCGNC ACTTGNACCA 
    NATTATTNNA NNGATGGNCC CTCCNGATTG CNTTGATNAG ACGCCTTNTT 
    ACAAANCCTA AAAANNNNGA TNCNGGNNCN CAANANANGG AGCNAGGGNN 
    GNCNNNNAAG GAGCANNCAN AANAAAAGAA AAAAAAAAAN GNNCNGNNGN 
    NNANAANNAA NCNNNANNNA NATTNTTTTT NANNCGGGGA AGNANGANNA 
    NNNNNCTGGN NNNNNGNGGA NANGNNANGN GNNAANAANA NGGNGNGGNT 
    NNNGACAAAA NGCAANAGGN GANNANAAAA ANNANANAGN NAAGNNTCNN 
    NAGATAGTCN TCAAAANNAN AANAANAANA NANAGAAGAA TGGGGNTTAT 
    NAANGGANNN AAGATTTANN NGNNAAAGAA GGAANAATAA ANANNGANNA 
    G

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16317473 [Map]; Strand: w
      • AT4G34060.1 - [+] show detail - demeter-like protein 3
        Distance: 0; Region: exon13 (CDS)
      • AT4G34060.2 - [+] show detail - demeter-like protein 3
        Distance: 0; Region: exon13 (CDS)
    Flanking Genome Sequence: 52-0967-1 - 3-prime edge 
    AAAACGGANG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATACNGAC 
    TTCATCGGAC ATGCATTACA ATTAGGAATA GTTTTTGTGC AAAAAACCTA 
    AAGTTGACAA AATTTGATTA AACCAACAAT ATTATTTATT CATTAATATA 
    AAAAAGAAAA AAGTAACGCA CACCTTTCCA AATGTTATCA TTTGATAATG 
    TAGTTCATAT CTGTAAAAAT ATTTAGAAAT AAAATTAGGT AATATGTGTT 
    CAAATGGCGT AAAAATAGTT GGCTTCTTAA ATTGAGGAAA AACATTTGAA 
    CTTACAAAGT TTCTTGGGGA AGTTTACACA NTCGTGGCCA AAGGTNCTTT 
    TGAATCGAAT CCATTGAAGG GNACCTGAAA CGAGTTCATG TTTATCGATA 
    GGAGATAGCN GTTAGTAACT NGNAATGTAT NATCTTAATC AAATTAATGA 
    GAAAACATAA CTCGAATNGT TGATGCATNA GAACTCCATT TGGTAAAGGT 
    TCAAGAGGAA CCACACCTAG TCGAACTGCT ATACNACCAC ATTNGTGTCA 
    ACCTACACAT TAAGACATGG GTTTTATCAG GNAAAATTAA TAATATATGT 
    NAAATGAAAA ATCATNAATA ATATTTTNAT ACCGGATACG CATTGATGNT 
    TAAGTCCTNA TCNGTCGNNC NCNCTNAGNC TTTTNCANCC NTATNCCTNN 
    GGTNTCCGAC ANATAANNNT CNGATANAAT TACTCAAAAC AATCNNNNGA 
    CCGNTTACCT TATAATGANN CNTNTGANAA CATAAAT

AT4G34060.1

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3859 Blast hits to 3748 proteins in 1288 species: Archae - 200; Bacteria - 2252; Metazoa - 138; Fungi - 63; Plants - 258; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34060.2

Model type
Protein coding
Short Description
demeter-like protein 3
Curator Summary
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks.
Computational Description
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Endonuclease III-like, iron-sulphur cluster loop motif (InterPro:IPR003651), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34215.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF303)
Curator Summary
Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.
Computational Description
Domain of unknown function (DUF303) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF303) (TAIR:AT3G53010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G34215.2

Model type
Protein coding
Short Description
Domain of unknown function (DUF303)
Curator Summary
Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.
Computational Description
Domain of unknown function (DUF303) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF303, acetylesterase putative (InterPro:IPR005181); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF303) (TAIR:AT3G53010.1); Has 345 Blast hits to 345 proteins in 104 species: Archae - 2; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Link
InterPro Scan - TAIR