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52-0974-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7890102 [Map]; Strand: w
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: exon1 (CDS)
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0974-1 - 5-prime edge 
    AGTAGAAGTG TTGCTGCTAG TCTCGGCTTC GACTCTCTTC CTCTGCTTTG 
    GTGCGTTTGA AGTTGTCGAT GGTCCAGCCA TTTCTTCCTT TTTCTCGGTT 
    AAGATCGAAA ATATCTGTGA ATATTTTTCG TGTTCGAGAA TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7889986 [Map]; Strand: w
      • AT5G23420.1 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: intron1 (CDS)
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 52-0974-1 - 3-prime edge 
    CTTCTACTAC CTTACGTCGC GCTAAAGACG GAAGCGCTTT CGCTCTCTGG 
    TGAGTTCTAC TTGCTTAATC TGTTGAATCG ACGGAATATT CTGTTTCGAA 
    TTTAGAGATC TAGGTTTTTA TTTCAGATTT ATTAGGGTTT TACAGCNTTT 
    AACGATTGGG TTTCTCATAA GTTTTCTGTG GATTGAATCG ATTACAGTGA 
    AGGATGTAAC AAGAGTGTAG CNTGTAGCGC TTATAAGCAT GCACAATTGC 
    AGTCTCGATG CTAAGATCAG AGTGAATCTC GGTAATCATC TCTTTGGTTT 
    TCCCCCCTTC TTATTGTATT GTGTGTTTCA TCGTCTCATA GTCTCTGTGT 
    ATTTGGTTGT TGTTGTTGTT GTTCAGAAGC ACAAGTTGTG GAGACACAAG 
    CAGAGGCTAA GAAGAAGCCT GCAGAGAAGT AAGACTCGTC AAGACTTGTT 
    TGTATAGTTT CTGTATGTGA TATTGAATTA TTTGAATGTT TGTTTTTGTT 
    CCAGGAAGAA GACAACATCT GATGGACCTA AGCCAAAGAG ACTTAAGAAA 
    ACCAATGATG AGAAGAAGAG CTCGTCTACT TCAAACAAGC CCAAGCGACC 
    TCTTACCGCT TTCTTTATCT TCATGTAATG TTTTTTGTTC ATACTTGCTT 
    TTTTTAGATT GGTATATAGT CTCTAGGGTT GATGCTGATG TTAACCTTTT 
    ACTTTACAGG AGTGACTTCC GTAAACGTT

AT5G23420.1

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: HMG-box (high mobility group) DNA-binding family protein (TAIR:AT5G23405.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23420.2

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR