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52-0976-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8927115 [Map]; Strand: c
      • AT5G25610.1 - [+] show detail - BURP domain-containing protein
        Distance: -10315; Region: intergenic
      • AT5G25615.1 - [+] show detail - transposable element gene
        Distance: -2062; Region: intergenic
    Flanking Genome Sequence: 52-0976-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGCCATCATG TCGAAAAGAG TTATCAGTAG 
    ATGGAGTGTC TCAATTTTAG TGTTTCCTTC TCTTGTGTGA GTCACCTAAA 
    ATTTGGACTA CTCTGTTCCT CTATATGATC TTCGTTTTAA AGTTGAACAA 
    AACNTGTATA GTAATAGATC GTAGATTCAT TAAACAAAAA ATTATTAGTG 
    ATGTGTGGAA GTCTTGCGGT TGTTTTGGTT GTCTAACAAG GAGATTCACA 
    AACTTTTATT CAAAACACGA TTACAGCTTG TAAAGAAACT GTGGAAATAT 
    TTTTTAAAAA CTCATCTGAC TATGCTTCAA TACAAGTTTC CTACCAAAAA 
    AGAGAGGGAC ATATGATTAA AATCGGAAAA TAATAAATAG TTTTTTTTTT 
    NTNTTCAAAG TNTTNGGNCC NTTAGTCNTG NNANNACCTT AAAAGTCAGN 
    GTANTTANAA AANGTNTNCN GNCNTTNTNT TTNTNTACAA AANGGGTTNA 
    TTTTTTCCCC ACTCAAAAAT NTNCCTNTTT AAAANCCNGA AGTTTNANTC 
    GATNANAANA NATNTTTATN CTTGAAATAA AGGGTTTATT ANANAAGTAN 
    ACATTTTTTA NAAAATAATT NGANAAGNAA ACACTTTTTT TAAAAATAGG 
    AGGAATAAGT GTTTTTATTG GGCTTGTNAA ATTTAAACCA TGGGANANAN 
    AAAAAATGGG GCTAAAGNCC AAANATGAGN CAATNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8927166 [Map]; Strand: c
      • AT5G25610.1 - [+] show detail - BURP domain-containing protein
        Distance: -10366; Region: intergenic
      • AT5G25615.1 - [+] show detail - transposable element gene
        Distance: -2011; Region: intergenic
    Flanking Genome Sequence: 52-0976-1 - 3-prime edge 
    ATTTACATCA ACCATGTTAC TCAAGACCTN CATCCTCATC TAGAANATTA 
    TTAGTTATTC CATCCAAAAC CAGTCATTGG GTTTGAGAAG AAAAAAGAGG 
    CTTCAATGTA CGTAGAGTGG CATCAAGCTC AAATACCTAG GCTCAGCTCT 
    TTCTCGCCAC ATATCATAAT ATNTTTGNTN CTCCACTAN

AT5G25610.1

Model type
Protein coding
Short Description
BURP domain-containing protein
Curator Summary
responsive to dehydration 22 (RD22) mediated by ABA
Computational Description
RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25615.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 6.0e-122 P-value blast match to GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)GB:CAA32025 ORF (Ty1_Copia-element) (Nicotiana tabacum)
Link
InterPro Scan - TAIR