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Mutant Lines
52-0978-1

52-0978-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 8034587 [Map]; Strand: w
- AT2G18510.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -968; Region: promoter
- AT2G18520.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCC TCCATCTCAA TCCACAAGCT CTCCGCTTCA 
TCGACTAAAC CATTCTTATA CAAAGATCCT AAAATGGTAG TGAAAGCAAT 
GATAGTAACT TCCACACCTT TAACCTCCAT ATCTCTCATA ATCTCCATAG 
CTTTTTCAGG CTTACCAGAG TCACAATACG ACTTAATCAA CATACCGTAA 
GAGATTTTAT CAGGAGTGAT ATTATTATAC CTCTGAGGAA ATTCGTCGAA 
CAGTTGGGGG ACTCTTTCAA ACAAATCAGA ATGAAGACAA GCAGCGAGTA 
AGGCATTGAA GGAAACAACG GTTCTGGGTG TGCCAAGCTT CNNGACCNGG 
CNGTCTACCT CNNAGACGAN ANATTTGNCN ATANGCTTTG AGAAGCNAGA 
AGAAGGNGGG TTNGNGNNCT GGAGCCCGAA CATGACTTGA TGTCATGTGT 
ATGATGGAGT NTAAGAACTT AANCCGCAAC CCGATNTTAT NAGCCTAAGT 
AGTGTTTCCT TGTTCGAAGA CACAAAGCCN AAGACTCATA TGGCTTNTGG 
CTACACCATG AAAGCT

3 prime edge [+] show sequence

Chromosome: 2; Position: 8034522 [Map]; Strand: w
- AT2G18510.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: -903; Region: promoter
- AT2G18520.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

GTGACTTGGA TAACACAGTT TATAATGTTA GACTTATGAA TGCTGCGAAG 
GAAAGTCCCG AGAGAGTTAA GGAATTGATG GAAGAAATGA GTANTGTAGG 
ATTGAAACCT GATACTGTTA GCTATAACTA TCTTATGACT GCGTACTGCG 
TGAAAGGAAT GATGAGTNNT TCCNAGAAAG TGTATGAAGG GCTTGAGCAA 
CCAAACGCAG CGACGTTCAG GACATTGATA TTTCATCTGT GTATAAACGG 
GTTGTATGAT CAAGGTTTAA CGGTGTTTAA GAAGAGCGCG ATAGTGCACA 
AGATTCCGGA TTTC

AT2G18510.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: embryo defective 2444 (emb2444); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 66829 Blast hits to 41224 proteins in 1633 species: Archae - 50; Bacteria - 5635; Metazoa - 30219; Fungi - 10282; Plants - 12025; Viruses - 917; Other Eukaryotes - 7701 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G18520.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G36680.1); Has 27260 Blast hits to 10896 proteins in 232 species: Archae - 1; Bacteria - 5; Metazoa - 93; Fungi - 122; Plants - 26343; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink).
Link: InterPro Scan - TAIR