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52-0990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7976280 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: -2355; Region: intergenic
      • AT5G23665.1 - [+] show detail - pre-tRNA
        Distance: -5118; Region: intergenic
    Flanking Genome Sequence: 52-0990-1 - 5-prime edge 
    GCCAGAAACA CTCGAAATCA TTAATCGTCT CTAATACAAA CGAAGCTTCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7976164 [Map]; Strand: w
      • AT5G23660.1 - [+] show detail - homolog of Medicago truncatula MTN3
        Distance: -2239; Region: intergenic
      • AT5G23665.1 - [+] show detail - pre-tRNA
        Distance: -5234; Region: intergenic
    Flanking Genome Sequence: 52-0990-1 - 3-prime edge 
    TTTCTGGCGA CATGTGTGGT GTGATTGCAT CTAAATTAAT TCGAAATAAA 
    AATAAAATTT GGAGGAGCAA AATATATCAC GAGCGAGACT CCAACATACT 
    AACGATACTT TAAGTCTTTA CCACTAGAAG AAAAGGTTTA GTATTTTTTG 
    TCAAAACAAA AGAAGAAGAA GTAGATATGT GATTAAAAAT ATATTATATC 
    TTCAAAAGTA GTCATAGGAG TTCTTCATAT CATTTTGTGT AAATATAAAT 
    TTCTAATCAT GTATTATGTG TGTTAATTAA CTAAGTATGA CGAGTTATAT 
    TATTAAAGAA TTTTGATGAT ATAATATATT CTTAACCACA TATAATCTTC 
    TTCTTTTTTT CCCCACAAAA AAAATCCTTA TTCATACTTC AGGTAATTAA 
    CACTCCTGTA TCTACTTATC ATTNNCTCTT GTAGTGAATT TANCCATATT 
    TGAAATGGAT ATAATATTTA TCACTCTNAN TNTCCCAGAA AAACGGTTAN 
    NCCATTGGNC AAATAAGTAT NGATTTTCTN NNGNNGGGGG NAANCANTCT 
    CGNNNTNNTA TNCNNNNAAA AAANATNNGG CCCCCNGNCC CNTNNNNTTT 
    NTNNNNTTTT NNTTNNNGGN GNNCCNNCCC

AT5G23660.1

Model type
Protein coding
Short Description
homolog of Medicago truncatula MTN3
Curator Summary
homolog of the Medicago nodulin MTN3
Computational Description
homolog of Medicago truncatula MTN3 (MTN3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G48740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G23665.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Gln (anticodon: TTG)
Link
InterPro Scan - TAIR