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52-0991-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10369123 [Map]; Strand: w
      • AT5G28440.1 - [+] show detail - unknown protein
        Distance: -806; Region: promoter
      • AT5G28442.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase,...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 52-0991-1 - 5-prime edge 
    CTCTCTACAA TGGATCTGAT TACAGATTCT GCTCATACAC AGAGATCATA 
    GGAACATTTG TTGGAAGAAG AAGAAGAAGA AGAAGAAGAA GGAGAAGAAG 
    AAGAAGATGG ATCTCGCAGT CGCAGATCAA TAAACGGAGC ATCAAAATTG 
    GAATTGCCCG ACCGGTTTAT GTTGATCGGA TTTTAATTTT GCGAATATAA 
    TCGGTTTGGG TGATACGAAT CTAATTTTAT GAATAAACCG GGAATCAATT 
    ATTGATTATC CTTGGCCTTC TCAACCCCAA TGCATTTCAA TTTTACGAAT 
    CTAATCGGTT TTGGGGATAC GTTGATGTAA GCCCAAATCC AACAGAAACA 
    GTTTCAGCCC ATCAAACAAT AATGACTAGA AATTGCCCAG ATTAATTTTC 
    AGCTCATGCA TGTGTGTGAT TACATAATTG AAAACTCTAG TTTTCTTCTC 
    TTTTTGTAGG TTGATTTTTT ATTTGTTTAA TAAATTTAAG AATTTAGTAA 
    AGTAAACGTA TAGAACTAGT AAATTCGCCG ACAAAAAAAG AACTAGTAAA 
    TTTTTATTAT AGTTTCTATA GATATTGTTT TTATAAGGGT ATAGATTAAA 
    GTCTGTTCCG GACAAACTAT TGACTATCTC AAATTCTTAG TTAATTATTT 
    TGATATAAGT CCAAAAAAAT AATCAATTAT GAATAAATCG GGAATCAATT 
    ATGATTATCC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10320314 [Map]; Strand: c
      • AT5G28350.1 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: 0; Region: exon1 (CDS)
      • AT5G28350.2 - [+] show detail - Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotid...
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 5; Position: 10369007 [Map]; Strand: w
      • AT5G28440.1 - [+] show detail - unknown protein
        Distance: -690; Region: promoter
      • AT5G28442.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase,...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 52-0991-1 - 3-prime edge 
    GTAGAGANAG ATAGCCATTT CAATTCGAGG TAGCCAAAGA TGTATATGGC 
    TTACGGGTGG CCGCAGGTGA TCCCGCTTCT ACCTGGATCG TNTCCGTNTA 
    CNNCTCNAAT CCTGNACCNT AAGCTCGCNG GCCGGCTA

AT5G28350.1

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28350.2

Model type
Protein coding
Short Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor
Computational Description
Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ribosome control protein 1 (InterPro:IPR009771), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044); BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT3G61480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28440.1

Model type
Transposable element gene
Short Description
unknown protein
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28350.2); Has 26 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28442.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor (TAIR:AT5G28350.1).
Link
InterPro Scan - TAIR