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52-0999-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10490610 [Map]; Strand: w
      • AT5G28510.1 - [+] show detail - beta glucosidase 24
        Distance: -6588; Region: intergenic
      • AT5G28515.1 - [+] show detail - transposable element gene
        Distance: -1384; Region: intergenic
    Flanking Genome Sequence: 52-0999-1 - 5-prime edge 
    GCTGCTAACG TGGATGCCAC TTCCTTGTAT TGTTGTTAAA ACGTGTGAAA 
    TTATACATCT TTTAAACCGA GATTTATATT TTCACTAGGG TCGACCCAAA 
    AAAAAAAANG NNNNGGGNAA NGTNGTAAAT TAAGTAAANC NGANCTNATN 
    ANNTTAAAGG NNGGGTTTTA AANCGGNGGN NTTTNNAGNC NTNANGGNCC 
    NAATTNTTNA GGTTTGTNGG GNCNTTGGNA TNTNCGGGNN GGGTNCGNGT 
    TTNCCGGGTT GGGNCTTTTN NANTTNAAAA ATNNAAANCC NNACCCCAAA 
    NTTTNGTTTN AAANCNTNTT NAANTTNCTT AAAAATCCCC AAAAAANTTN 
    TAAAANCNCT NGAGTTTTTA NCTNTCNNNT NTNTNAAAAN GTAAANAANG 
    TCCCCANCAN TNTNCAAAAN NTNTNAAAAN AAAAATNTTT NAGGCCCTNA 
    AATTTTGGAA AATNNNATTN TNNCTAANAA ATTNTTNNTN TAAANNTNTN 
    TTTGGNATNT NTGGGGGNCC TNNANCGGAN CCGGNTNNGG NTTTNAAAGN 
    GTAGNATAAC NANCCNGGNC CGTNNACCAC GGGNNCCCCT TTAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10490494 [Map]; Strand: w
      • AT5G28510.1 - [+] show detail - beta glucosidase 24
        Distance: -6472; Region: intergenic
      • AT5G28515.1 - [+] show detail - transposable element gene
        Distance: -1500; Region: intergenic
    Flanking Genome Sequence: 52-0999-1 - 3-prime edge 
    TTAGCAGCCA TGTATAATTT CACACGTTCT TGTAAATTCG GGTATGAAGT 
    TTGAATGTTT TCAGAACTTG GGTATGTATT AGCACATAGA AAATGTTTAG 
    GTATGAATT

AT5G28510.1

Model type
Protein coding
Short Description
beta glucosidase 24
Computational Description
beta glucosidase 24 (BGLU24); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G09260.1); Has 11366 Blast hits to 11018 proteins in 1472 species: Archae - 140; Bacteria - 7863; Metazoa - 718; Fungi - 202; Plants - 1442; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G28515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR