1. Home
  2. Mutant Lines
  3. 52-1000-1

52-1000-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7969621 [Map]; Strand: c
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: -191; Region: promoter
    Flanking Genome Sequence: 52-1000-1 - 5-prime edge 
    CAAACTAGTA TTGATAGACT AGTAAGAACC CCAACCTTTG ATTATTTCAA 
    GAACTATGAA CAGAAGATGG AAAAGGATCA AAAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7969737 [Map]; Strand: c
      • AT5G23650.1 - [+] show detail - Homeodomain-like transcriptional regulator
        Distance: -75; Region: promoter
    Flanking Genome Sequence: 52-1000-1 - 3-prime edge 
    CTAGTTTGTG GGGTTCATAA AAGAAAGTTT ACGATTTCAA ATCAATTGTT 
    TTGGTCTTTT TTTTTCTTTG GTCGGAGAGT ATTTTGGTTG ATCTAAATTG 
    TTTGAAGTAA TAGATTTTTT TGAGAAAATG AATTTGGGAC AGGAAATTAG 
    TGTTGGATCG TCTTGGAGCA AGGATGATGA TATTGCTTTC GAGAAAGCCC 
    TTGCAATTTA TAACGATAAA ACAGAGATTC GTTGGAAAAA AATTGCTACA 
    GTTGTTCCGG GAAAAACTTT AGAACAAGTT ATAGAGCATT ACAACATTTT 
    AGCTCGTGAT GTTATGTTGA TTGAATCTGG ATGTGTACGT CTTCCANATT 
    ATAATGATTT TTTANAANAA CCAAATCACA ATGCTTTTGG TAAAGAAAGA 
    AGCATATTGG AAGGTGGCAA CGATCGCAAA TATGAGTCTA AACACAAAGG 
    TAAATCAAAA CTAAAGCAAA AACGACGAAG GGGTGTTCCT TGGAAGCCTT 
    TTGAACACAG GTTCCTACTA AACTCACTTG TTTTTAAAGA ATATTTTATA 
    TGTGGATGTT TTTTTTATAG TAAACTTATA GGTCACTGAA TGTGAAATTC 
    CGAATATGTT GATTTGTATA TCATGTGGTC ACTAGTAACA TTATTGCATT 
    TTCAGTTTGA TAATATAATT CAAAATGTGT NGATTCNNCA CTATTTTTTG 
    NTTTCTTAAT GAAACCTAAA CAATTTCTGC AT

AT5G23650.1

Model type
Protein coding
Short Description
Homeodomain-like transcriptional regulator
Computational Description
Homeodomain-like transcriptional regulator; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G08520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR